RNA id: CI01000016_01088942_01089316.mRNA


Basic Information

Item Value
RNA id CI01000016_01088942_01089316.mRNA
length 788
RNA type mRNA
GC content 0.55
exon number 1
gene id CI01000016_01088942_01089316
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1088552 ~ 1089339 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCAAGGGTCAAACTCGTGAATGATGCTCTCGAAGCGAATAACTGCGAAAAGTCGAGAGCTGAACCCTGCCAACCAGGCCAGAAAGAGAATGGTGAACGACAGCAAAGACTGCCATCCCGCCGGCTGCGTCAGTCCTCCGGACAGGCCTCCGCCGCCGCATCCAGCCGGGGAGTTGGGCCGTCCGTTGCCCGAGACCGAACCTCCAGCGTTGGAGCTCGCTTTGTGCTTACAGTCGGAGGCGGTGTGGTGCTCCGCCATGTTCTGGAGGATTTGGTTAGGAAAGCACTTCCCACCGCCACGCACCCCTCTTTCCACCAACCCGCTCCCTCCTCGGCGCCAATATTTCTGCGCAACCAGGCCTTCGCTCCAACTGCAGGTATTTGACGTTGTGTTTTAACAATTTCGATTTATTTGCAGCAGATTCCGCGTCTGAGTGGCATGCTAACCGGCTTGTACCATTCGGCACACGAGATCCACTGGTAGGAGGGGGTGAACAGGGCGGTTCTGTTCCATACACAGCAGGAAGAATCTCTCAGCCTCTCATAGCGAGACAGGTAGAACAAGGCGGGTCACACGCGCGACTCTTTCAGCCAATCCGCTGCAAGCAAACCACTGACAGAAGCCAATGAGATCACGCACAGTCTGGGACGTTGACAAACACAAACGGAAAAACGTTGACAGGAGGTTAGCCAATCCTGTCCCTGGTTTTTAATAACGAACACTCGTTTGAGCCAATCAGCACGAATAACCGTCGCGGCGCTGTGCCGCGATACACCAATGAAATAAA

Function

GO: NA

KEGG:

id description
K07151 STT3; dolichyl-diphosphooligosaccharide---protein glycosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107235 lncRNA downstream 28498 1059288 ~ 1060054 (-) True G94253
TU107220 lncRNA downstream 31511 1056355 ~ 1057041 (-) True G94238
TU107229 lncRNA downstream 44755 1043578 ~ 1043797 (-) True G94247
TU107055 lncRNA downstream 79399 1001544 ~ 1009153 (-) False G94084
TU107057 lncRNA downstream 80893 1001544 ~ 1007659 (-) True G94084
TU107240 lncRNA upstream 35703 1125042 ~ 1125924 (-) False G94256
TU107242 lncRNA upstream 35703 1125042 ~ 1131942 (-) False G94256
TU107239 lncRNA upstream 39458 1128797 ~ 1131942 (-) False G94256
TU107241 lncRNA upstream 39458 1128797 ~ 1131942 (-) True G94256
TU107299 lncRNA upstream 156007 1245346 ~ 1245597 (-) True G94310
CI01000016_00843272_00857193.mRNA mRNA downstream 231256 843150 ~ 857296 (-) False CI01000016_00843272_00857193
CI01000016_00775184_00778097.mRNA mRNA downstream 310455 774658 ~ 778097 (-) True CI01000016_00775184_00778097
CI01000016_00754785_00770356.mRNA mRNA downstream 318196 754683 ~ 770356 (-) True CI01000016_00754785_00770356
CI01000016_00679328_00729780.mRNA mRNA downstream 358586 678792 ~ 729966 (-) False CI01000016_00679328_00729780
CI01000016_00601605_00607255.mRNA mRNA downstream 481297 600622 ~ 607255 (-) True CI01000016_00601605_00607255
CI01000016_01134396_01182271.mRNA mRNA upstream 44475 1133814 ~ 1182271 (-) True CI01000016_01134396_01182271
CI01000016_01195747_01197970.mRNA mRNA upstream 106378 1195717 ~ 1199062 (-) True CI01000016_01195747_01197970
CI01000016_01199558_01199730.mRNA mRNA upstream 110206 1199545 ~ 1199730 (-) True CI01000016_01199558_01199730
CI01000016_01202843_01213613.mRNA mRNA upstream 111919 1201258 ~ 1213613 (-) True CI01000016_01202843_01213613
CI01000016_01224759_01234682.mRNA mRNA upstream 134797 1224136 ~ 1234682 (-) True CI01000016_01224759_01234682
TU107853 other upstream 1181497 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 1895921 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 2546268 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 2776422 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 3823369 4912708 ~ 4923404 (-) True G97040

Expression Profile