RNA id: CI01000016_01277792_01304615.mRNA


Basic Information

Item Value
RNA id CI01000016_01277792_01304615.mRNA
length 2487
RNA type mRNA
GC content 0.47
exon number 13
gene id CI01000016_01277792_01304615
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1276928 ~ 1304762 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCATAAATCCACAGCCTCCTGCTTGGCTGCAAAGACTTATGGGAGGAGGAAGTGTCCCAATCGACAGCCAGAACAACAGCTCATGCATGCAGGTGTGAAATGACAGTTTTATAAGTCAAAGAAATGTCTGTCTATGTGTGTGTGAGTGTGTGAGTGTTTGCATTAGGGGGTGTGTGTGTGCCCAGATGCAAAGCTCAGTAAAAATTCCTTCACATCCACATAGACAAACACACATACACATCCTACTATGTTTGATCAGTTTATGGCAGACCTTTGGCACTGAGTTAACTCCGACAGATTAATGTAGGAGAACCTGCCAGCAGCCCTCTGCCGGAGAATCGGCACCCGGATGAGTGTGTGTATGTGTGGATACATTATGACACATGTGGTAAATTCATAGTCTCTCTCTTTCCATGCTCTGCCTAACCTGACAAATCCAATTATAAGACAAATTATTTTGTCTGGAAGTGTTTGTTTTTGTTTGCTGGAAATTGGCTCGGACTGAGTTTGCTTTATGTTCGTTGTGTATACTTGTGGTGGTCTTCCCGTAAGCGCTTTATCGGGGCTATATGCTGAAGCTGTTTCTTGAATCAGCGGGAGATGGCTTTATTTTAGAGCATTAATCAAAAAGGCTGCTCGCTAAAACGTCACCATTAGTTTGTTTGCATAGAGAAAGATTTGTGTCGCTCTCATTTGAGCCATATAGACTTTTAAAAGACATATTTTGCACTGCATTCATAACTAGTGCTGGCTTGTCTAAATAAAGCCACTACATCTTTGTTGGCTGGCCTTGTCCTTCCACTTCTCTAAAAGATCCCCCATTGTTCTAAATGACAGATGGCTACTTTATCACATTAAGCTACAATGACACTCAAAAGCAAGTATTTTTACAACCTGCAAGCATCAGTGACCAAATTTAAAAGATTGCTCAATGCCGCTGTTGACCTGATTATCGGCCAGTGGACGTGTCTTCGCCAGGCAGCCGGCCCTTTTAAACTCAGCAAGAGATGGGACTCGGCCAAAAGAAAGGATCGCAGAGAGATGGATTGTCAGTTCACGGAATTAAAAAGCAACAGTGAATACAGTCAGAGGGGAGACTGGAATGGCGCTTGGAGGCCAAACTCCATAGCTCAAAGAAAGCAGACCAGAAGTGGCCTCATCCTATGCCCGGTGTTAATGAAGGTTGGAGCATTAATAGGTGGGTGGCGGAGAAAGCCAGTTAATCAGTGTAAGTCTTGGTCCTGTTTGAAGTACCAGACTATGGTGGAGGGGGGACATGGGATGTTGGCCTCTAGGGGGGAATTTAGGGGTCGAGCAAACGCTTCAGCGCTGAACCCGTACAGCTTAAACGAATCAGAACAGCGTGGTGATTGCACACCGGCTTCAGGTGAAATGAAGTATACATCGCTGACCCCAATGCCCTCTGAAGCCCTCGACACTAACAGACGGGGAACCTCTGCGGCCTGGTCTGGAGAAGGCATCTCACCTGGGGCAAAAACCAATTCACACCACCGGCGTAAGAAGCTCACTCATCCACATCCCATTAGAAACCACAGGCAGAGAAAACCAGCTCTCCTGTCCCACGCTTTAATGAAAGTCCAGTTTCCCTTGCCTAAAGGTAACTTGCCCTATTATGCATCCTCTCTGGAAGATATAGTGTTCAGTTTAATGCTCACATATCACTTTCCCAAAAGTGGTGGAGTACAGAGGGATTGGATAGGGCCCTTCTCACAGACTGACATGGGGACTGGAACAGCTAAACCTGGAGCTGGAATCTGCACTGAAGGGGTTTTGGAGGTTGGATGCCAAGCTGTTCTCCTAATGAGATGCATACCAGCATTGAAGCCTGTGAGACAGATTGGGCCTCCTGCTAGCGCGGTCCACCACGGTCAGAGACCTTCCACTGCCCTGCAGGCAATACAGCCACAGTTTCACTCTCTTCCTATCATGCTCCATTGCTGCTTACCTTGTGCTCCGCCCACCTCTGCATGCTCGACATCCTTACAGCGCATTTGGGGAGCACAAGCTATGGATTGTCTGTCTAGAGTGGGAAAAGGTCTGAATCTTTTCACTCCAGATATCGACCCAGCTGGAGCGTGTCATGTTTTGATGAAGGGGGAAACATGCTTGGAATATCCCCTCTCTCTCTCGCTCACACACGCTCAGAAGTATGAAGGTACAGCAGGTGTTGCTTGTGGAGTGTGGAATGGTGGTGAGGCCTGTGCCATTCTCTTAGCTGGCCGAGATGGCGTAATGGGAACTGCCAGCTGTGATGGTAATTACAGCACCACTGAAGAGGATGGGGGCTGTTTTTCTTCAGGGGGCTTGCAGCTGAACTGATTTTTCATTTACATGTTTTAAATAAGATGAAGGACCTCCCCAAATGGGTTTGAGCTGTGCATTAGCGAGAGTGGATACATGCTATTTTTCAAGTGTTGTTCTTTGTCACCGGCGGATTGTTTTAACGCACCTCCATGCTTGGATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106382 lncRNA upstream 14721 1261920 ~ 1262207 (+) True G93497
TU106332 lncRNA upstream 41082 1228198 ~ 1235846 (+) True G93449
TU106360 lncRNA upstream 64307 1212344 ~ 1212621 (+) True G93476
TU106322 lncRNA upstream 78555 1195710 ~ 1198373 (+) True G93442
TU106312 lncRNA upstream 192161 1084467 ~ 1084767 (+) True G93434
TU106367 lncRNA downstream 35690 1340452 ~ 1342798 (+) False G93483
TU106368 lncRNA downstream 35690 1340452 ~ 1341657 (+) True G93483
TU106433 lncRNA downstream 89936 1394698 ~ 1449594 (+) True G93547
TU106486 lncRNA downstream 116858 1421620 ~ 1449437 (+) True G93598
TU106455 lncRNA downstream 156838 1461600 ~ 1461978 (+) True G93567
CI01000016_01253760_01273553.mRNA mRNA upstream 2975 1253406 ~ 1273953 (+) True CI01000016_01253760_01273553
CI01000016_01238151_01242924.mRNA mRNA upstream 33968 1237991 ~ 1242960 (+) True CI01000016_01238151_01242924
CI01000016_01217119_01220858.mRNA mRNA upstream 54991 1217119 ~ 1221937 (+) True CI01000016_01217119_01220858
CI01000016_01183747_01191853.mRNA mRNA upstream 84070 1183747 ~ 1192858 (+) True CI01000016_01183747_01191853
CI01000016_01122656_01129008.mRNA mRNA upstream 147920 1122656 ~ 1129008 (+) True CI01000016_01122656_01129008
CI01000016_01408124_01408966.mRNA mRNA downstream 101874 1406636 ~ 1409165 (+) True CI01000016_01408124_01408966
CI01000016_01476236_01476607.mRNA mRNA downstream 171474 1476236 ~ 1476762 (+) True CI01000016_01476236_01476607
CI01000016_01509959_01560806.mRNA mRNA downstream 205197 1509959 ~ 1561122 (+) True CI01000016_01509959_01560806
CI01000016_01563821_01567070.mRNA mRNA downstream 257636 1562398 ~ 1567529 (+) True CI01000016_01563821_01567070
CI01000016_01588035_01601276.mRNA mRNA downstream 282308 1587070 ~ 1601909 (+) True CI01000016_01588035_01601276
TU106281 other upstream 349396 905400 ~ 927532 (+) True G93406
TU108565 other downstream 2557413 3862175 ~ 3862305 (+) True G95439
TU108786 other downstream 2967874 4272636 ~ 4273905 (+) True G95648
TU108629 other downstream 3529796 4834558 ~ 4836655 (+) True G95503
TU108946 other downstream 3915118 5219880 ~ 5225941 (+) True G95792
TU109033 other downstream 4101107 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00022216 True 1590 lncRNA 0.46 6 NC_007127.7 39000013 ~ 39024997 (-)