RNA id: CI01000016_01563821_01567070.mRNA


Basic Information

Item Value
RNA id CI01000016_01563821_01567070.mRNA
length 2527
RNA type mRNA
GC content 0.41
exon number 6
gene id CI01000016_01563821_01567070
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1562398 ~ 1567529 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAAAAGAAATTGCAGTCTTTAAATTTTGAGTGTTTACATTAAAACTGAGACATTTACATCATTATACCTGGGATCATATGAGTACGCATATTTTTCCTTGTAATAATGTATATTTTTAGTTTTGTGGTTTCATCCCTGCTGAAAAAAAAAAAAAAAAAATTAAACCATTACAAGTAGGTTTGCTGGTCTTAACAGGTTTAAACTGGTCTCTCCATCTGGCCAAGCAAGAGTTCATCTGGTTTATTGGGTCGCCAAGCTAGTCTTCCCATCTGAAAAGTGCTCACGGAGACTAGTAAAGACCAGCAAAACCATCGTAGGCTATTTTAATATTTGTTTGTCTGTTTTGTTTTCCCAACAGGATGAAACAGTAGAATGAAGATTGCAGTTCAGGTAGTGTATATGCAGTATTATAAGCTGTATTTTATGCGATGTTACTGGGTTTTATATAAATGTGTCAGATTTATGAATTAGTGGAGGAAAAAACAAGTGAATAGATGATAAAATGCACACTACTTCTAATTCAAACCAATGCACTAGGACCCTGGGGAAGCTAATCTGTGTTGTATAGATACAGTAGGAGAAATTCCATTTGTCATCTTCTAAAACTTAAATAAGGAGGGGGGAAACAGCCCTCTCTGGCCGAGGGGCTTCTGAAAGTGCTCCGAAAAGCCCCACAAGATCTTGGAGTCTCCACGTGACAGCAGCGCCTATATAGCATCAGCACCAGTAGAGTGATACTCCATCACCAGCCGAGCACTGCAGCATATGCCACAGTTACACACACATCCTCATGCACCTCAAGGGTTTATTCTAGAGCTTTTGCAGACTATTGCATCCATGTGTTTTCTCACTCTGTCTAGGGGACGAAAGGACTAAACTTTTCCTGCGAGAGGGATGCTGGATGTTCCAAGTCCACTTTGGCAGTCGGAAGGAACTTGATGTATAGGCTAAGTTTCTCTTCTTTTTTTTTGGACTGGACTCGCGCAGGTATATTTCTTTCGCTCTGTGCATCTACTTTTGAAGGCATCCCGCGTCTCGTGCGCTTTTGGAGATTCGCTAATTCCTTAAGTTCTTTTGAATGAAATAGTTCACTCGCAAACACATTGATCCATCAAGGTGTAATTGTTACTCAAAGAAGCTCAAGTTAAAAGCTTTTCTTTCTCCACAGACATTAACGAGACACTTTTTATTGTTAAAAAAAAGCACGTTTCGCTCTTTAAAATGACATTAACCGGTGGTGAGAAATGGTGTTTTCTCTACCCATCTAATGTGTGACACAACCGAGTCCGGACTCCTCAACTCCCTGCTCCTCTGTGGAAAAATATACATATTGAAACCTCTTATACGGACCTTGAAGGCTCGCGGCGAGTACCTTTGACGCTTTCTACCGTGAGTCGGGACAATCATACAGCCGCCCAGATGCAGTTTCGCCTGTTCTCATTTGCGCTGATCGTGTTGAACTGTGTGGACTACAGCCACTGTCAGACGCAGCAGTCTCACCGCTGGAGAAGAAACAAAAGAGAAAAGGGTTGTTGTACCTTCAAGATTGTGTTCAGCATCCTGTCAGAGAATCTAAGTTCTTTACGGTGTCTCCAAATGATGCGTAAAGATGACGTTTTAAAGATGTTTCGTCTACGTCTAGAAACGATCAAACTTGTTGGCAGAGGCAGACTAGTTAAGCATTTTCAGGAGGATTGGGGGAGTTTGATGAGGAAAATGGTGGCAGAAGTGCATCTGGAGTGCTTTACAGATGCCAGCGAGTTTGCAATGATATCACTGCTTGGCCCAGGGGTAATACTTTTCATTTTTATTCTCTGGCTAATGATGCCACCTGCTGACTACATAAAACTGTGGGCTTGCGTACCAGCGCAGACTAGAGAACATTCACATACAGACTTGCAGGAGGTTAAGGAGCGGCTAGCTCTGATGAACGGCCCGATTAAGCTCACAGTAATGGAACTAATAGAAGTCTGTTTCCAGAGAAACACAGTCGCGGTAATCCATGGGAAAGTGGAAGAGAGGAAAGGCTTAGCTCCATCCCTGAGCTCCCCAGCTTCACCCTGAAGGGATTAGGGGAAAAGCACCTGTATTTTAACACTATCGAACAGTTATATCTTAATCTGCTGGCAGCAAATGGCGATCTGTCCCATTATGCCTCAGAAACTGTTTTGTATAGATAAATATTTCATAAAAAAGAAATGCAAGATGATAAGTTTATATGGTTCATAGTTTAGTAAATCCGAACCTGTATGTGTTTCTTTCTTCTGTGGTGCACAAAAGATGACTTTTTTTTTTTTTTCCCCGTGCAATGAAAGTCAGTGTTTTGCATACAGGTTTGGAAATTCATACAGGTTCGGAACAATGTAAGGGTGAGTAAGTGATTACAGAGCTTTAATTTTTGGGTGAACTTTTGGTGTGTGCAGCTCATAATTAGAGAATATATGTAAGAAAAAATGGCCTGAGTGGTGAAACTGCGAGAGTGTAGGATGTAAAAGACTTCTTTGTTTTACAGTGATCATGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106512 lncRNA upstream 8372 1496393 ~ 1554026 (+) True G93624
TU106453 lncRNA upstream 93043 1462117 ~ 1469355 (+) True G93565
TU106455 lncRNA upstream 100420 1461600 ~ 1461978 (+) True G93567
TU106433 lncRNA upstream 112804 1394698 ~ 1449594 (+) True G93547
TU106486 lncRNA upstream 112961 1421620 ~ 1449437 (+) True G93598
TU106614 lncRNA downstream 346268 1913797 ~ 1942317 (+) True G93711
TU106696 lncRNA downstream 401009 1968538 ~ 1978432 (+) True G93780
TU106693 lncRNA downstream 472060 2039589 ~ 2045283 (+) True G93777
TU106710 lncRNA downstream 526423 2093952 ~ 2094182 (+) True G93794
TU106695 lncRNA downstream 537377 2104906 ~ 2105133 (+) True G93779
CI01000016_01509959_01560806.mRNA mRNA upstream 1276 1509959 ~ 1561122 (+) True CI01000016_01509959_01560806
CI01000016_01476236_01476607.mRNA mRNA upstream 85636 1476236 ~ 1476762 (+) True CI01000016_01476236_01476607
CI01000016_01408124_01408966.mRNA mRNA upstream 153233 1406636 ~ 1409165 (+) True CI01000016_01408124_01408966
CI01000016_01277792_01304615.mRNA mRNA upstream 257636 1276928 ~ 1304762 (+) True CI01000016_01277792_01304615
CI01000016_01253760_01273553.mRNA mRNA upstream 288445 1253406 ~ 1273953 (+) True CI01000016_01253760_01273553
CI01000016_01588035_01601276.mRNA mRNA downstream 19541 1587070 ~ 1601909 (+) True CI01000016_01588035_01601276
CI01000016_01656995_01657299.mRNA mRNA downstream 89466 1656995 ~ 1658390 (+) True CI01000016_01656995_01657299
CI01000016_01989129_01990437.mRNA mRNA downstream 421495 1989024 ~ 1990995 (+) True CI01000016_01989129_01990437
CI01000016_02000795_02079453.mRNA mRNA downstream 432680 2000209 ~ 2080896 (+) True CI01000016_02000795_02079453
CI01000016_02220464_02221013.mRNA mRNA downstream 652935 2220464 ~ 2221030 (+) False CI01000016_02220464_02221013
TU106281 other upstream 634866 905400 ~ 927532 (+) True G93406
TU108565 other downstream 2294646 3862175 ~ 3862305 (+) True G95439
TU108786 other downstream 2705107 4272636 ~ 4273905 (+) True G95648
TU108629 other downstream 3267029 4834558 ~ 4836655 (+) True G95503
TU108946 other downstream 3652351 5219880 ~ 5225941 (+) True G95792
TU109033 other downstream 3838340 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797

Expression Profile