RNA id: CI01000016_01577710_01581289.mRNA



Basic Information


Item Value
RNA id CI01000016_01577710_01581289.mRNA
length 2126
RNA type mRNA
GC content 0.38
exon number 4
gene id CI01000016_01577710_01581289
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1576406 ~ 1581679 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGCGTTATGTGAATGGGAATAGAGAGAAAAGTCAGAGTTGGCACAGAGTCAACTGTCTCATTTTGAAATTCTGTCATCATTTACTCACCCTTTTGTTGCTCCAAGCTGTATAACTTTTTTTCTTTCTTCAGTGGAACACAAAAGGAGATGTTAGTCTGACAGCCTCAGTCACTATTCACTTTCATTGTAATCTCCATTTGTGGAAGGAAGAAAGTCATACGGTATTGGAACAACATGAGGGTAAATATTTTTGGGCGAACCATCCATTTAGAATCAGAAACGCTCGCCTCTTATAATGGAAAAGAAATTGGGAGTATGCAATAAAACTTTCAGATCATCCACTAAAAGTGTGCCAGTCCCCACATTGTTCCACATGGTTGAAGACAGTACATGGAAAACTGCATCAATCCACCCGCATTTGTTGCATCTGACTTTATTTGTCATGGTCATGGGCATGGAAATCACACTTTGCTGAAGATTAATACACCAGAGCCAGAATGGTGGGATATGGCAGGGTTGGTGCAAGACAAAAAGGGATTCAGAGGACCTGAGGGCAAACCTGCTGATGTGTATACTAATACCTTGGCGTGGCTTTTTAGTCCGTCGAGAGATCATAGAGCATGCATACGGGCTGATTATTGTCTTTCATTTAAAGTCTGTAGAGAAAGTTCAGAGGCCAGATCAGAAGTGATCCACAGGGTCAAAAGTGGAGAGCACCACGGGGGTGGCAGGCAGAAACATGCCGAGGAACCTCATATGGTCCCAACCACTGAGAGGGGACTTCAAAGCCTGATGCCCAAGACTGAGTCTTCTACTCCATAAATAGCTTCAGCAGACCCTCAAAAACTTCTACTGAGCTAATTAAGCAGAAATTCAACAGGATACCACGCAACACCCATGCCATCGACTTCAAAAACGGCACGCATACGATAAGCATAAGCTTGAAAATAACAAAAACAGGCTCTACAGTTGCGGTTTCCTGCACACATGGGTGGCACAATGTATAAAATCTGCGTGTATTGTTACAAATTTGTCAAATCCCCGTGAAAAGCTGGCAAGCGAGGACATGCCAGAACACTTCCAGATACAAATGAACACCAGGGCAGGGTTTTATGTAATGGCCGCTCATCTCATCTGCTCCCCAGGGCAGAGCTTACACTAAAGAGCTCTGTTATAATCACTCAACTTCAACCTCTTCTTGCTCTTACCAAAACAAACCTGTCTGGCAGCCAGATACATCTCAGATACGGCCCCTGTATGGCCCCAGTACTCCCATAAACACATTGGCCACACCATGCAACTTTCTTCTTTTGCTTTTGAGACCTGAAAGCACTGTTGATCTTGTCAAAGAAATTCTTGCTAAAAATGTTTGTTGACAAAAAGTGATAATGAAGATGAGGTGAAAAAGCATCATAATGATAATTAAATGACTTATTTAAAATACTGTGGAAAATAATACCGATATTACTATAAATTTGATGTTGATTCATTGTATCTTTGGAATTGCCCTGTTTGAGCTGAAAGAGCTGAATTCTGGTAAACTGAACTGCTTTATTTAAAGCTCAATAGTCCTATAAACAGTATATGAGATTAATTATCTATATATACAAAATTAACATAATATTACACCACTATTCAAAGGTTTGGGGTTTAAAAATATATGCTGTTTAAAATACATGCTGTTCTATTGAAATTTCTATTCATCAAAGTATCCTGAAAAAAAAAAAAAAAACATTGATCAATGTTTCCACAAAAAAATATTAAGCAGAACAACTGTTTTCAACTTTGATAATAATAATTATTGATTCTTGAGCAGCATATTAGAGCATATTAGATTCAGCATATTAGATTCAAGGATCAAGTGATATTTAAGACCGGAGTAATGGCTGCTGAAAATTCAGCTTTGCCATCACAGGGATGAATTATATTTGAAAAAATATTGAAATAGAAAACAGTTGTTTTAAAGGTTAAATGTAAATGTTTCACTGCATTTTAGTTCGAATAAGGCAGATTTGATGAGCTTAAGAAACTCTTTCCAAAACATTAAAAAAAATCTGGAAAATTAAGCGAATACTCAATGCATAACTCAATTACGTAAAGTACTTTGAGCATAAAGCAATAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU107435 lncRNA downstream 8124 1568055 ~ 1568282 (-) True G94434
TU107434 lncRNA downstream 10755 1565320 ~ 1565651 (-) True G94433
TU107354 lncRNA downstream 12495 1563089 ~ 1563911 (-) True G94364
TU107394 lncRNA downstream 124004 1452175 ~ 1452402 (-) True G94394
TU107340 lncRNA downstream 240742 1335082 ~ 1335664 (-) True G94351
TU107450 lncRNA upstream 41353 1623032 ~ 1624002 (-) True G94449
TU107517 lncRNA upstream 151400 1733079 ~ 1737573 (-) True G94510
TU107462 lncRNA upstream 215950 1797629 ~ 1826281 (-) True G94460
TU107657 lncRNA upstream 490785 2072464 ~ 2078409 (-) True G94634
TU107697 lncRNA upstream 568684 2150363 ~ 2150589 (-) True G94674
CI01000016_01476991_01494147.mRNA mRNA downstream 81412 1476837 ~ 1494994 (-) True CI01000016_01476991_01494147
CI01000016_01396291_01399075.mRNA mRNA downstream 175452 1394715 ~ 1400954 (-) True CI01000016_01396291_01399075
CI01000016_01341525_01342959.mRNA mRNA downstream 232848 1341347 ~ 1343558 (-) True CI01000016_01341525_01342959
CI01000016_01224759_01234682.mRNA mRNA downstream 341724 1224136 ~ 1234682 (-) True CI01000016_01224759_01234682
CI01000016_01202843_01213613.mRNA mRNA downstream 362793 1201258 ~ 1213613 (-) True CI01000016_01202843_01213613
CI01000016_01653014_01654553.mRNA mRNA upstream 70708 1652387 ~ 1654559 (-) True CI01000016_01653014_01654553
CI01000016_01659416_01671969.mRNA mRNA upstream 77295 1658974 ~ 1671969 (-) True CI01000016_01659416_01671969
CI01000016_01689633_01693021.mRNA mRNA upstream 107816 1689495 ~ 1693672 (-) True CI01000016_01689633_01693021
CI01000016_01835869_01947822.mRNA mRNA upstream 254066 1835745 ~ 1947842 (-) False CI01000016_01835869_01947822
CI01000016_02120276_02136906.mRNA mRNA upstream 538477 2120156 ~ 2137185 (-) True CI01000016_02120276_02136906
TU107853 other upstream 689157 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 1403581 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 2053928 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 2284082 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 3331029 4912708 ~ 4923404 (-) True G97040

Expression Profile