RNA id: CI01000016_01656995_01657299.mRNA


Basic Information

Item Value
RNA id CI01000016_01656995_01657299.mRNA
length 1267
RNA type mRNA
GC content 0.30
exon number 2
gene id CI01000016_01656995_01657299
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1656995 ~ 1658390 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCATAATGGTCCCGGTCCCTCAATCACTGCACAACCCTGTGAAGAGAGATCACATCGGTATTTTCCTGACCATTGCCTTGCTGGTCATAGCCATTTCATGTCTGCTAGGTGCTGGATGTGCATACAAAAACAACAGAGGCAGGGATGAAGAGAGCCTTCAGCAGAGATTCTCTTGAACTTTTTACAGTCTTTTTAACGTTATCATGGCACGGACTCATATTTGTATATAGCATAGGAATTGGAGATGCGCAGATACTAAATTTCACCACAGATAACCCATTATTTAAAATGATATCTGGCGATATTGATAGTTTGAGTTTTCTTAAAGAAAAAAAAAATCCCTCTCAACTAATGCTGTAAACTATAAAGGGAACCCTCTCACTTGGTACATTAATATTACAGATTAAAATTAACAACAGAACTATTATATATTATATATTCAGCTGCTATTTTTTTTTTCAGAGATAATAAACATTGGATGACTTTCCTGAGGTAAATGCAATGTTAAGTGACATTGCTCATAAGCTGTTTTGTTGTTTATCCACCCCCTTTTTGATTGACAGAATATAATTGGCTGATCGGTGATCACTAATAGGAATACTACATCAACTTTATATATGGTTTGTCCAGAGTATTACAGTTAACTAGAAACTTTTGTTACTTGAAATAAAATAACCGTTATCTGAAATAAGATCAAAATAGGCTAGTTGCCAAGAAAGAAAGTTTAACTTAATGTACTAAAATAACTAAAATTAAAATTATTTAAAAACTTAATTTTATACTAGACGTATAAAATTAAAAAAAAAAAAATCTTAAAGTAGAAAATATTTTAACTTATTATAACTAATGTGATTACTTAACAGTTTTGCACATTTATAGCTGTGTAAATGGAGACACATGAAAACACTTCATTTGGGTTTGATGTCTTATCCTCAGAACTTTTTTTAGTATTGTGTTAATATATCTATTTTTGTTTTTTTCTATGCTTCATATCTACCTCTGATGATTGTTTTATTGCTAGTCTAGTTTTTTTTTTTTTTGACCGTGTCACTGGACTGATACATAAAACAAAAATTTCTTCAAATTAAAGTATTATTTGTACAAAATGTTCTAACTATGCTGTTTTTTTTTTTTTAATTGATAATTTGTTTTTTTGTATAGTCGAAAGAAACTTGTGAAACAACCTTTTGTTCTATACTATAGAAAAAAAACATGACAGTGTCCTGGCAGAATAACCACTGTTGTAGTTCATTGTCATTTGTCAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106512 lncRNA upstream 102969 1496393 ~ 1554026 (+) True G93624
TU106453 lncRNA upstream 187640 1462117 ~ 1469355 (+) True G93565
TU106455 lncRNA upstream 195017 1461600 ~ 1461978 (+) True G93567
TU106433 lncRNA upstream 207401 1394698 ~ 1449594 (+) True G93547
TU106614 lncRNA downstream 255407 1913797 ~ 1942317 (+) True G93711
TU106696 lncRNA downstream 310148 1968538 ~ 1978432 (+) True G93780
TU106693 lncRNA downstream 381199 2039589 ~ 2045283 (+) True G93777
TU106710 lncRNA downstream 435562 2093952 ~ 2094182 (+) True G93794
TU106695 lncRNA downstream 446516 2104906 ~ 2105133 (+) True G93779
CI01000016_01588035_01601276.mRNA mRNA upstream 55086 1587070 ~ 1601909 (+) True CI01000016_01588035_01601276
CI01000016_01563821_01567070.mRNA mRNA upstream 89466 1562398 ~ 1567529 (+) True CI01000016_01563821_01567070
CI01000016_01509959_01560806.mRNA mRNA upstream 95873 1509959 ~ 1561122 (+) True CI01000016_01509959_01560806
CI01000016_01476236_01476607.mRNA mRNA upstream 180233 1476236 ~ 1476762 (+) True CI01000016_01476236_01476607
CI01000016_01408124_01408966.mRNA mRNA upstream 247830 1406636 ~ 1409165 (+) True CI01000016_01408124_01408966
CI01000016_01989129_01990437.mRNA mRNA downstream 330634 1989024 ~ 1990995 (+) True CI01000016_01989129_01990437
CI01000016_02000795_02079453.mRNA mRNA downstream 341819 2000209 ~ 2080896 (+) True CI01000016_02000795_02079453
CI01000016_02220464_02221013.mRNA mRNA downstream 562074 2220464 ~ 2221030 (+) False CI01000016_02220464_02221013
CI01000016_02235073_02261683.mRNA mRNA downstream 576683 2235073 ~ 2262308 (+) True CI01000016_02235073_02261683
CI01000016_02337039_02343109.mRNA mRNA downstream 678649 2337039 ~ 2343109 (+) True CI01000016_02337039_02343109
TU106281 other upstream 729463 905400 ~ 927532 (+) True G93406
TU108565 other downstream 2203785 3862175 ~ 3862305 (+) True G95439
TU108786 other downstream 2614246 4272636 ~ 4273905 (+) True G95648
TU108629 other downstream 3176168 4834558 ~ 4836655 (+) True G95503
TU108946 other downstream 3561490 5219880 ~ 5225941 (+) True G95792
TU109033 other downstream 3747479 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797

Expression Profile