RNA id: CI01000016_04636548_04646848.mRNA


Basic Information

Item Value
RNA id CI01000016_04636548_04646848.mRNA
length 4065
RNA type mRNA
GC content 0.49
exon number 6
gene id CI01000016_04636548_04646848
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4635827 ~ 4646916 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAACCCCAGCACTGTATCTGCTTTTCAGCACACCAAAAGTCTAGTTTAGAACTGTTCTGCAGTTACTATGAGTGATCAGGAGTATGTGGAGCATCAGTACATGTGCAGTGAGTGCCAGCAGCTCTTTAATACGCTGGAGGAGGTGCTGGTGCACCAACAGATCCACACCGGAGCAGAGGGGGACGAGGCTGAGCTCCTGCCAAGCCTTGAGGACTGTGACACTGGGGAGAGCCAGTATCAGTGCCTGGAGTGTGGAGCCATCCTCAGGAACCCAGACGAACTGCTGCTGCATCAAGAGCTGCACATGAGAGAGGCAGGCCAGGAGCTATGTGAGGTCACAGAGGTGGATTCTGTGGATGCAGAAGTGCCAATCCAGTACCAGTGTCTGGAATGTCTGGCTCTTTTTGACACACCTGAACTATGGTTGGCACACAGACAGACACACAGCAGAAGCAGCACCCACAGCAGCCTAAACACTGACACAGAATATGTTCTTCAGGCAGATGGTTCAGTCACTCCAGTTCAGTTGCTCAATGTGCAAAATCTAGTTCTGGATGAACAGAGGGCAGGCCAGATCCTGACCCTAGCCCAGGCTCTTCGAGAGCAAGAAAACCCATCTAAAACTGCAGCCCCTCCCAGAACTATGCTAGTGCCAGCAAATGCTTCCCTGCCCGGCTCCACCTCTGCGATGCTCCGCCTTCAGTTTTGCTCCGCCCAAGCGATCGCTGATGGTTCTGCCTCAGCTACTCTTCGAAAAGCTAAACTCCTCGCCCCTCTCTTACCTGCCGATCCTATCCGGCTGGACAATGTGACCACTTTGAACCTTCTCCCTTCCTCTGGTCAGGTGAACACACTAAAGAAGCAAAATGAAGAAATTTTAATTATCCATCCTTATGAGTGTTCTGAGTGTAATCTGCTATTTAGCACACCAGAGGATTTCCTTCAACACCAGGGGGAGCACTTCTTAGGCCAGGACAAAGAGACTGGGGACACTGGGGTGATGGTGGGGTATGAAGACAGTTCTGGGGCTAAGGAAGATGAAGGAAGAAGCGACGGATCAGAAGAATGCAGCAAAATTGGAAAAGTTAGTGGTGGGAGACGTACGTACACCGCCCGCTCAGCTACTTTGGGTCTGACGTCGTCTGTCTCATCCAGCAATCTTCAATGTGAGGAATGCAAAAGAACTTTCACCTCTGCCAATCGGCTTGTGGCACACCTTCGTGTGCATGAACAAGGAACACACGAGTGCCCAGAGTGTGATAAAGTATTTAAGAAGTTGGTGTCCCTTCAGACACACATGCGCACACACTCCGGTGAGGCACGTTTTCTGTGTGTGGACTGTGGACATGGTTTTACCACAGAGATGACTCTTATGATACACAGGAAATCTCATACATCTGAACCACTGCACAAATGCCCATTTTGTGCCAAAACCTTCACCAACATGACCAAGTTCTTGTACCATCGCCGCACTCACAGAGTACGTGAGCCAACCACACCAGTCTCTCAGTTTGTACTGGCACAGCAGTCACCTCTCTCTATCATCCAAAGAGCAAGAGAACGAGAGGCTGCTTGGAGGAAAGAAAGACAGACGGTGACGATTCCTCCTGTGAAAGATGACGGAAATGAGTCAAGCGACACAGGTCCTGTGCTCATTGAAGGTATTGCTGTGGTCTCCCAGTCTTCAGAGTTGACAGAGAATGGGCTTTATGCTGAACACTCAAACACAGAACAAGAACAAAATGGCGGGAAAATGCTGACAGATGACCCAAACCATTCAGCTACTGCCAATGTGGAAGGAGGAGGAGAGGAGGAAGGTAAACACAGGACTCCTGCTGCTGAGGAAGAGCCAAAATTTCCATGCTCCATATGTAAAAAAAGATTCTCCTCACAGGTCCGTCTGTTGCGGCATCGTCGAACGACTCATATGACCGAAAGGCGTTTTAAATGCAACATCTGCGGGAAACCGTTCAAAAAGCAAATCCATCTGCGAAACCACCTGCGCACACATACGGGCGAGCGGCCGTTCCAGTGCAGCGTATGTGGAAAGACCTTTTCCTCTCTTGCAAATCTTTCCCGCCATGGACTCACACACACTGGTGTCCGTCCATACCGGTGTGACATTTGCCACAAAGCCTTCAGTCAATCATCGAATCTACGTCAACACCGTCAGCATCTTCACAGCAATGCAACACCCTCACCCTGTCCAGACTGCTCTGCCACTTTTATCCGTCCTGCTAAACTCGTAGCTCATCGTTTTCTTCACCACCCAGGGTCACCGGCACCTTACCCCTGCCCGCACTGTTCCGAGGGGTTCTTGCGCAAACGGCAGCGAGACATACATTGCCTGGAGGAGCATCCTGACCTGACACAGCCGCATTGCATCTCCCAGGACTCCCAGGTTAGAGGTCAGCAGGGTTTGACAGATGACACTGAGCAACAAAGCGCTCCATCAATGACAAAACCCAATCTGGATTGCACTATTTGCGGCAAGCGCTTAAACTCTCCTGCAAATCTTCGCCTGCACCAGCTAAGTCACGGACTTGGGCCTGGCCGGCCACGAGGCTCCAACTCCGCCCTTGGGAAGTCTCATCCTTGCCCAGTATGTGGAAAACTGTTCGTTTCAGCCTCAAGCGTTACACTACACCAGAGAGTTCACACCGGTGAGCGTCCGTATCCTTGCGCGATCTGCGGAAAAAGGTTTCGCCAGAACACGCACCTGCGGGAGCACCTTCGTACACATTCGGGTGAGCGTCCGTTCCGATGCGAGTTCTGCGATAAGGGCTTTGTGCAGAGCATGCATCTGGCAGAACACCGGCGTACACACACGGGCGAGCGGCCGCATGCTTGCGGCGAATGTGGAAAGACATTCAAGACAGTTTCAAACCTTAGAAATCATCGTAAGACCCACGCCCGCTCCCAAAAGCAACAAGAGCCGAAGCACAGCGGAGAAGCAGTGCCCGCAGAAGCCAACACAGCAACTGTTACTGTTGTGGAGGCTTCTGAGATGGACATGGCAACAGCAATACCATCTTTCTGCCAGCAGGGGATGCAGCTTGGACAGCCGCAAGTCATTCAGATACAGACATCTAACCTGACACAGGTCTGTATGCTAGTTTTGCTGTGTTTTGTTACAATTTTTGTGCACCAAGTAACAGTTTATATTTTCTCACCGTTTCAGACTCAGGGCACTCCCACTATCATGTGTAATGAGTTTGGAGAGACTATAGCCATCATTGAGACAAGCGGAGACCTGGCAGAGGCCATCGAGCTGTACCACACTGCACTGGAGGGTGGCATCAACATGGAGGCCATCACTGTGGACAACCTGCAGTTATTGTGAGAGAAGTGCAGCATTCCAGTGGCCATCATCTTGGAAATTTGAATATTACAATTAAAATATGAGCATAAGTAATGTCAGATCAAGCACAGAGACAAAAAAAAAAAAGGAAAAGCAGAGGTTGAATTAAGACAGTGTTGCAAATTCAAGACATTGTATTAATTTCCATTAAAGTTCTTGAATGTGTGAATAACCTCAAGAAGCCACTCTAATAGATCCATTCAAATATTTTTCAGCCTTTTTTTGACTTTTTGAGACAGGTCAATTTTTTAAAAAATAGGGCTGATTTTAGAGGACGCAACTGAAGTCTGTGATAAGACTGCTCCTGTTTTAGGACTAGGAACGGACAGTCTTGGTTTCTGACCACACACTGCATGACACTCTTGTTCTGACGGAGCCAGATGGAAGGCATGAAGGCACAGATTTAGAAAGAAGTACACCCACGGACAGTGGAGCAAGTTGATACCACAGGATGGCTTAAAATGTTTCCTGGTTTACATTCTAACCTGCAGTTCTTGCAAGGAGTTCATTTAAGGGCATTGAGCTGAAGAACAAAACAACAGGAAAGAGGGAAATCAAAACATGTTAGTGCTCAATCATGGTCAAACATTATGCACCAAGTGATCCCCATGTGTTACATACATCACATTTCTCAGTCTGTACACTGAATGTTTGTAGCTTTTTTAATGTTATGAAGCTGATTTGGAGAAGTCTTGCAAATAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110280 lncRNA downstream 6546 4628038 ~ 4629281 (-) True G96921
TU110269 lncRNA downstream 8386 4625440 ~ 4627441 (-) True G96915
TU110268 lncRNA downstream 12525 4620698 ~ 4623302 (-) False G96915
TU110343 lncRNA downstream 30293 4605090 ~ 4605534 (-) True G96970
TU110342 lncRNA downstream 31313 4604074 ~ 4604514 (-) True G96969
TU110272 lncRNA upstream 2571 4649487 ~ 4654397 (-) True G96916
TU110350 lncRNA upstream 17843 4664759 ~ 4664982 (-) True G96977
TU110356 lncRNA upstream 39945 4686861 ~ 4687114 (-) True G96983
TU110426 lncRNA upstream 169714 4816630 ~ 4897720 (-) True G97050
TU110447 lncRNA upstream 205184 4852100 ~ 4853062 (-) True G97069
CI01000016_04422169_04424433.mRNA mRNA downstream 211394 4421995 ~ 4424433 (-) True CI01000016_04422169_04424433
CI01000016_04385978_04389107.mRNA mRNA downstream 245757 4385722 ~ 4390070 (-) True CI01000016_04385978_04389107
CI01000016_04370577_04377413.mRNA mRNA downstream 257710 4370042 ~ 4378117 (-) True CI01000016_04370577_04377413
CI01000016_04333323_04333836.mRNA mRNA downstream 301991 4332873 ~ 4333836 (-) True CI01000016_04333323_04333836
CI01000016_04300720_04301736.mRNA mRNA downstream 332320 4300649 ~ 4303507 (-) True CI01000016_04300720_04301736
CI01000016_04696937_04698098.mRNA mRNA upstream 49769 4696685 ~ 4698618 (-) True CI01000016_04696937_04698098
CI01000016_04802496_04812976.mRNA mRNA upstream 155538 4802454 ~ 4813266 (-) True CI01000016_04802496_04812976
CI01000016_04921091_04922518.mRNA mRNA upstream 273952 4920868 ~ 4922518 (-) False CI01000016_04921091_04922518
CI01000016_04927541_04930989.mRNA mRNA upstream 279178 4926094 ~ 4930989 (-) True CI01000016_04927541_04930989
CI01000016_04936283_04939240.mRNA mRNA upstream 289097 4936013 ~ 4939240 (-) True CI01000016_04936283_04939240
TU110003 other downstream 704776 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 970514 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 1650186 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 2359552 2270836 ~ 2276275 (-) True G94786
TU110416 other upstream 265792 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 678603 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 765343 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 1512070 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 4241917 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020569 False 3174 mRNA 0.52 7 NC_007127.7 11227946 ~ 11235572 (-)