RNA id: TU108987


Basic Information

Item Value
RNA id TU108987
length 497
lncRNA type sense_over
GC content 0.40
exon number 1
gene id CI01000016_05488887_05502270
representative False

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5484205 ~ 5504239 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGACCCTCACAGGGCTTACAGCAGAGAGCTCAAGTGCCTTTTTCTGTTTCTCTGACTGATTTTTATTCTTCACCTTCTCTGCCTCATTTTTCTTTCTCACTGTCTCATGTTTCGCCCTCAGAATCAAACTGCACATTCTTTAAATTCTACACTTCTGGAGAGAATGCTGTCATATTTAAGAAAACGACACAAAAAAGTAAGTTCTTCCTGTATACTCTGCCCTCTTTCTCTCTTTGCCTTCTATGTGTGATCCTCGTCTTTGCTCTCTCATCTATTCATTCTCTCTTCTTCCACACTGTTTCTCTCATTGAAAATCAGTCATGTGTTTCTGTCTCCTCCCACTGCTCCATGACTCTCCATCTCTCCACCTCCCATACATGCACAAGAATTATCATTCTTGAGCTCCTTTCTTGTTCAATTCTTATTTCAGTTTACACAATTCCTGAATGCCCCAACAAAATACACCCAAAATATCTCTTTTAACAGGTTTGTCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108991 lncRNA upstream 1093 5494241 ~ 5494914 (+) True G95831
TU108966 lncRNA upstream 6884 5484205 ~ 5489123 (+) False CI01000016_05488887_05502270
TU108964 lncRNA upstream 29024 5466670 ~ 5466983 (+) True G95804
TU109052 lncRNA upstream 32750 5463028 ~ 5463257 (+) True G95885
TU109051 lncRNA upstream 33083 5462718 ~ 5462924 (+) True G95884
TU109055 lncRNA downstream 140 5496643 ~ 5496842 (+) True G95888
TU109056 lncRNA downstream 1765 5498268 ~ 5498957 (+) True G95889
TU109057 lncRNA downstream 2855 5499358 ~ 5499655 (+) True G95890
TU109058 lncRNA downstream 3287 5499790 ~ 5500142 (+) True G95891
TU109059 lncRNA downstream 3914 5500417 ~ 5500794 (+) True G95892
CI01000016_05475350_05482964.mRNA mRNA upstream 12061 5475350 ~ 5483946 (+) True CI01000016_05475350_05482964
CI01000016_05445824_05454816.mRNA mRNA upstream 40591 5445824 ~ 5455416 (+) True CI01000016_05445824_05454816
CI01000016_05405791_05407797.mRNA mRNA upstream 88044 5405791 ~ 5407963 (+) False CI01000016_05405791_05407797
CI01000016_05398036_05400369.mRNA mRNA upstream 95601 5398036 ~ 5400406 (+) True CI01000016_05398036_05400369
CI01000016_05388832_05396460.mRNA mRNA upstream 98927 5388832 ~ 5397080 (+) True CI01000016_05388832_05396460
CI01000016_05698858_05706081.mRNA mRNA downstream 202355 5698858 ~ 5706719 (+) True CI01000016_05698858_05706081
CI01000016_05797506_05798075.mRNA mRNA downstream 301003 5797506 ~ 5799585 (+) True CI01000016_05797506_05798075
CI01000016_05828974_05833309.mRNA mRNA downstream 331895 5828398 ~ 5833377 (+) True CI01000016_05828974_05833309
CI01000016_05837368_05837667.mRNA mRNA downstream 340080 5836583 ~ 5837927 (+) True CI01000016_05837368_05837667
CI01000016_05878037_05885761.mRNA mRNA downstream 381534 5878037 ~ 5886192 (+) True CI01000016_05878037_05885761
TU109033 other upstream 88144 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 88144 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 270066 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 659352 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 1222102 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 1664138 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 2287562 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 2517860 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 3499595 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 4299128 9795631 ~ 9795684 (+) True G99016

Expression Profile