RNA id: CI01000016_06158996_06159538.mRNA



Basic Information


Item Value
RNA id CI01000016_06158996_06159538.mRNA
length 1004
RNA type mRNA
GC content 0.37
exon number 1
gene id CI01000016_06158996_06159538
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6158722 ~ 6159725 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATATAAACCTGAACTTAGTCAAAGCACTGACAAACACCTGACTAGACACAATATGGTGATATGTTGTTTCTAATTGTCTTATTTCTGTTGTCTTGAATGTTTTTTTTCCTCTGTTGTTAATTTGTCATCTAGTACTTATTAATTAACCAATTTTGATTGTACTGCATTTGAAATATGTACAGTTTAACTTGTTAATGCTGACAAAATTGGTACCAATCTGCATTATGAAATAACATTTTTGCACTTGCACAAAACTTCCTCAGATTGTAAAAATGCTGTCATTCTTGGTCATCTTGACTGTCACGCTCCACACTTGTCTGAGTGAGCTGGACATACTGCACCCATCTGAGCCCTGCACTAAAGCGAAGAAAAAGGATGCGTATGATACTTTCCTTCACCGTCACCTACGCAAGGACATCCCAACTGATCCACGCAATCTAAGAGAATGGCAGAAGTTCATTACCAAAATCAAAACCTGGGACAGGCCTATTCAATCATTCTTTCCCATCAGTGAAGCAAGAATGGTGATGGCTGTGTGTTCATCAGGAGGAAAGGAGTATCAGGGAAACCTCTGCATCAGCAAGAAGCCTCTCAAGTTCTTCACTGTTTACATCAAGAATAAGAAGCAGGTCAAGAAAGTCAAAGTTCAGGAACAACATGCTATTCTTGGCTGTGATAAAATTGAAAATAAATGCAAACCTGTTCATTTTGAGGCAAACACAAATGATGCTACACCAGATAATAACAAAGCAGACTGCAGTAAAGCAATGGTAAATGCAAGCTTTATACCTTTTGAAGAGCTGTTTGAAATCTAGACACATGACCTGCAGTAAAAATGTCTGGATGTTACTTTGTAGCTTTGCTGCTTTCATTTTTATCTAACCAATGCTGAAACTGCAGTAATATGAGGATGTCTGCGCATATTCATAATGAATGCAAATTGTGAACACACAAACATTTTCTATATGCTCTTGCCTCATTAATTCAATCATTTATTACTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU109294 lncRNA upstream 40252 6081335 ~ 6118470 (+) True G96096
TU109293 lncRNA upstream 77478 6080752 ~ 6081244 (+) True G96095
TU109290 lncRNA upstream 80427 6076378 ~ 6078295 (+) True G96092
TU109285 lncRNA upstream 162002 5996498 ~ 5996720 (+) True G96087
TU109149 lncRNA upstream 173898 5984065 ~ 5984824 (+) True G95967
TU109126 lncRNA downstream 53253 6212978 ~ 6213633 (+) True G95949
TU109193 lncRNA downstream 80111 6239836 ~ 6247237 (+) True G96011
TU109156 lncRNA downstream 216375 6376100 ~ 6376980 (+) True G95974
TU109366 lncRNA downstream 324852 6484577 ~ 6484776 (+) True G96163
TU109442 lncRNA downstream 531465 6691190 ~ 6691843 (+) True G96236
CI01000016_06058748_06068258.mRNA mRNA upstream 90074 6058748 ~ 6068648 (+) True CI01000016_06058748_06068258
CI01000016_06038939_06045122.mRNA mRNA upstream 113320 6038939 ~ 6045402 (+) True CI01000016_06038939_06045122
CI01000016_06030950_06038330.mRNA mRNA upstream 120392 6030950 ~ 6038330 (+) True CI01000016_06030950_06038330
CI01000016_05966893_05982233.mRNA mRNA upstream 176077 5964215 ~ 5982645 (+) False CI01000016_05966893_05982233
CI01000016_05960829_05963788.mRNA mRNA upstream 194934 5960829 ~ 5963788 (+) True CI01000016_05960829_05963788
CI01000016_06174800_06210259.mRNA mRNA downstream 15075 6174800 ~ 6211031 (+) True CI01000016_06174800_06210259
CI01000016_06270425_06375483.mRNA mRNA downstream 110700 6270425 ~ 6375483 (+) True CI01000016_06270425_06375483
CI01000016_06398455_06420062.mRNA mRNA downstream 238730 6398455 ~ 6420138 (+) True CI01000016_06398455_06420062
CI01000016_06684506_06687365.mRNA mRNA downstream 524781 6684506 ~ 6687405 (+) True CI01000016_06684506_06687365
CI01000016_06756366_06782229.mRNA mRNA downstream 596641 6756366 ~ 6782619 (+) True CI01000016_06756366_06782229
TU109033 other upstream 750859 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 750859 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 932781 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 1322067 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 1884817 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 1000916 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 1624340 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 1854638 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 2836373 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 3635906 9795631 ~ 9795684 (+) True G99016

Expression Profile