RNA id: CI01000016_06684506_06687365.mRNA



Basic Information


Item Value
RNA id CI01000016_06684506_06687365.mRNA
length 1051
RNA type mRNA
GC content 0.49
exon number 6
gene id CI01000016_06684506_06687365
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 6684506 ~ 6687405 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGCAGAATCTGGCGACTACACTGGACATTATGTTTGCAAACTTTCCAATGGAGCTGGAAAGTTGCAGCAGCTTCGACTCGTTTGAGGACGCTCAAGTTGAGCCGTTGAGTGGCGCTGTGATGCCGGCTGACAGAAAGCCCAGCAGTAGCAGCTGCCGCCCAACAGAGGCGCCTCAACCACCGTCTCTCCCTAGAGTCGTTTGGGAGGACGACACAACCGAAAAGCACACACAAGGGTGGAAATTCTTTGCTGGCCTCCGGAGAGCGTGGAAGTCTAAGAAAGATTCCTTCCACACCCAGGAAGAAACCCAAGTGTGTGCTTTTGTGCCTGAGGATCCATCACAGGAGCTTCCACACACATCCAGTGTGGATCCGACAGGCACAGATCCACTGGAGTCTGAGCCAACAGACAAAAAGCACACACAAGGGAGGAAATTCTTTGCTGGCCTCCGGAAAGTGTGGAAGCCTAAGAAAGATTCCTTCCAAAGCCAGGAAGAAACCCAAGTGTGTGCTTTTGTGCCTGAGGATCCATCACAGGAGCTTCCACACACATCCAGTGTGGATCCGACAGGCACAGATCCACTGGAGTCTGAGCCAACAGACAGATCCTTTGAATCTCTTTATGATGTGGGAAAGAAACTGAAGTCGAGACACGGTGTCAGTTATCATGTAGGATTTCGAAACTCCGATGACAAACGAGTGATCATTAAATTTATTAAGAAGAATCGGCCTGAGAAACTATTGGAATTGCCTGGGTATTCCAATCCTTTAAGTCAAGAGGCAGCTGCGATGTTGATGGTGCAAAAGCCTCCAACTAGTGAGCATCTCGTACAATTATATGATCACTTTGTCATGGAAGATCAAGACATCTTGATAATGGAGTATCCACGTTCCTACATCACCCTGTTTGAGTATGTCCAACGAAACAGAGGTAACCTGACTGAAACCGCGGTGAAACACATCATTCGGGAGCTCATTGTTGCTCTTCAGCACTGCACGGGGAGAGTCTGAATTGCTTGGTGTGTTCAACATAGGTGCTACTGACTGCCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU109366 lncRNA upstream 199730 6484577 ~ 6484776 (+) True G96163
TU109156 lncRNA upstream 307526 6376100 ~ 6376980 (+) True G95974
TU109193 lncRNA upstream 437269 6239836 ~ 6247237 (+) True G96011
TU109126 lncRNA upstream 470873 6212978 ~ 6213633 (+) True G95949
TU109294 lncRNA upstream 566036 6081335 ~ 6118470 (+) True G96096
TU109442 lncRNA downstream 3785 6691190 ~ 6691843 (+) True G96236
TU109174 lncRNA downstream 39722 6727127 ~ 6727496 (+) True G95992
TU109463 lncRNA downstream 119316 6806721 ~ 6807026 (+) True G96257
TU109144 lncRNA downstream 122402 6815647 ~ 6816180 (+) True G95962
TU109525 lncRNA downstream 235954 6923359 ~ 6924302 (+) True G96299
CI01000016_06398455_06420062.mRNA mRNA upstream 264368 6398455 ~ 6420138 (+) True CI01000016_06398455_06420062
CI01000016_06270425_06375483.mRNA mRNA upstream 309023 6270425 ~ 6375483 (+) True CI01000016_06270425_06375483
CI01000016_06174800_06210259.mRNA mRNA upstream 473475 6174800 ~ 6211031 (+) True CI01000016_06174800_06210259
CI01000016_06158996_06159538.mRNA mRNA upstream 524781 6158722 ~ 6159725 (+) True CI01000016_06158996_06159538
CI01000016_06058748_06068258.mRNA mRNA upstream 615858 6058748 ~ 6068648 (+) True CI01000016_06058748_06068258
CI01000016_06756366_06782229.mRNA mRNA downstream 68961 6756366 ~ 6782619 (+) True CI01000016_06756366_06782229
CI01000016_06813604_06813789.mRNA mRNA downstream 126199 6813604 ~ 6813937 (+) False CI01000016_06813604_06813789
CI01000016_06890651_06904100.mRNA mRNA downstream 202741 6890146 ~ 6904634 (+) True CI01000016_06890651_06904100
CI01000016_06954301_06958598.mRNA mRNA downstream 266896 6954301 ~ 6958603 (+) True CI01000016_06954301_06958598
CI01000016_07178060_07180135.mRNA mRNA downstream 490655 7178060 ~ 7180810 (+) True CI01000016_07178060_07180135
TU109033 other upstream 1276643 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 1276643 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 1458565 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 1847851 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 2410601 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 473236 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 1096660 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 1326958 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 2308693 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 3108226 9795631 ~ 9795684 (+) True G99016

Expression Profile