RNA id: TU111256



Basic Information


Item Value
RNA id TU111256
length 498
RNA type TUCP
GC content 0.46
exon number 1
gene id G97766
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 7785226 ~ 7785723 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTTACCAGACTATAAGAACTCCCCAACTTTTTCGTTTCAACCTAACTCAAAGTTGCTTGGAATCCTGGATACCTAGTTATTTCCTCCAGAATAAGAAACGTACGCTTGGAATTGTATTTCACCCTCATGAGGGAATAACGTCTTTAGGCTATTCGCACGCGCTTTCAGCAGACTTGAGCGAGATGCCCGAAGAGCCCGCGCGAGACTCCTCCAGCTCCCCCGTGTCTCCAGCGGACAGCCTCAGCAACAGCGACGGAGAGCCCGACAGGCCACCGAAGAGAAGCGGGAGAAAAAGACGGTCGAGCAAGAAAAACGGGGAGGATTCCGACAGCTCGACCCTTGGGAAAAGGGGGAAAAAGTCTAGCAACAGCAGCAACAGCCCCCAGTCTTTTGAGGAGCTGCAGACACAGCGCGTGATGGCGAACGTGCGCGAGCGACAGAGGACGCAGTCGCTCAACGAAGCGTTTGCGGCTTTGCGCAAAATCATCCCAACTTTACCATCCGATAAACTGAGCAAAATACAGACGCTGAAACTCGCCGCCAGGTGAAAGCCACGAACTTGGAAAACACGAGGACCAATGCGCCGACACAGTGCTAGATTCCTTCGTAATCTTGGGGAAAACGGCTAATGTTCCAACAGAGGTCATGGCTATTATCGAGAGAAGGCCACGGACAGCGATTTGTTGCGCGTGCGCTGCATATGGACTTCCTCGCGAGTGTTATTATTGACGACGAATGTTGGAAATGTGTGCATATGCATGTTTTTTTTTATTTTTAGTTTTTTGAAGATTGAGTTGTGCATAGCTTTCTTGGAGAAAGTGAAATTGCATCACAAGGACTGTCGATGAGAAGATGGGGAATTAAGCCTCTAGTTCGAATCCTGTGCAAAATACAAAGTTTTAGTACAATTCTATTTATTTATTGATGACACACTTTTTGAAATGAAGGCAAATGTATCCTGTGTCGAAATGCATTCTTATTTTTTGTTACTTTTGTAAATAAATGTGTATTTCTGCAATAAAGAGGAAGAACTTTTAAGAAA

Function


GO:

id name namespace
GO:0030500 regulation of bone mineralization biological_process

KEGG:

id description
K09069 TWIST; twist

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111253 lncRNA upstream 5673 7778071 ~ 7778392 (+) True G97764
TU111249 lncRNA upstream 12100 7771638 ~ 7771965 (+) True G97760
TU111205 lncRNA upstream 131712 7652042 ~ 7652353 (+) True G97724
TU109781 lncRNA upstream 229525 7554210 ~ 7554540 (+) True G96518
TU109704 lncRNA upstream 453054 7329766 ~ 7331011 (+) True G96453
TU111232 lncRNA downstream 39665 7825388 ~ 7827695 (+) True G97745
TU111233 lncRNA downstream 60193 7845916 ~ 7847529 (+) True G97746
TU111234 lncRNA downstream 61934 7847657 ~ 7859181 (+) True G97747
TU111284 lncRNA downstream 120501 7906224 ~ 7906558 (+) True G97788
TU111329 lncRNA downstream 172526 7958249 ~ 7959322 (+) False CI01000016_07956184_07965721
CI01000016_07759095_07759370.mRNA mRNA upstream 22791 7759095 ~ 7761274 (+) True CI01000016_07759095_07759370
CI01000016_07743396_07746536.mRNA mRNA upstream 36682 7743088 ~ 7747383 (+) True CI01000016_07743396_07746536
CI01000016_07711605_07715888.mRNA mRNA upstream 67804 7711605 ~ 7716261 (+) True CI01000016_07711605_07715888
CI01000016_07484583_07551063.mRNA mRNA upstream 233002 7484583 ~ 7551063 (+) True CI01000016_07484583_07551063
CI01000016_07463735_07471367.mRNA mRNA upstream 312237 7463735 ~ 7471828 (+) True CI01000016_07463735_07471367
CI01000016_07851297_07854401.mRNA mRNA downstream 65033 7850756 ~ 7854610 (+) True CI01000016_07851297_07854401
CI01000016_07937188_07955977.mRNA mRNA downstream 151465 7937188 ~ 7956457 (+) True CI01000016_07937188_07955977
CI01000016_07956184_07965721.mRNA mRNA downstream 170348 7956071 ~ 7965940 (+) False CI01000016_07956184_07965721
CI01000016_07969424_07983149.mRNA mRNA downstream 182605 7968328 ~ 7983301 (+) False CI01000016_07969424_07983149
CI01000016_07998560_08008403.mRNA mRNA downstream 212837 7998560 ~ 8008446 (+) True CI01000016_07998560_08008403
TU109637 other upstream 622775 7160641 ~ 7161290 (+) True G96389
TU109033 other upstream 2376202 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 2376202 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 2558124 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 2947410 4834558 ~ 4836655 (+) True G95503
TU111320 other downstream 228640 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 1210375 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 2009908 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 2138695 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 2448677 10234400 ~ 10236851 (+) True G99410

Expression Profile