RNA id: CI01000016_08090285_08090545.mRNA


Basic Information

Item Value
RNA id CI01000016_08090285_08090545.mRNA
length 310
RNA type mRNA
GC content 0.46
exon number 1
gene id CI01000016_08090285_08090545
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8090285 ~ 8090594 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCTCCGGAGTTCCTCCTAAACAGCCGATAATATCCAGCTGTGAGAGTCGGATCAGACGGGAGTCGCCAACGCTGCCGCATTTACAGACGCGAGTGTGGCAGCAGAAGAACCATATGGTGAAACTAGTTGATACAACATCAAATATACGTACAGAAAATATGACAACTCATCTACTCGTCATCGTAATGAAATGCAGAATTCAAAAAAACTTCCAAGCCGTTGCGTGCGCTGTCAGTGCCAGTAGGTTTCGCCATATTTAGAGAGAGGGATTTTACTGTATCGCTTCCATGTGCCACTTCAAGGCTTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111322 lncRNA upstream 26975 8058969 ~ 8063310 (+) True G97826
TU111314 lncRNA upstream 106719 7982169 ~ 7983566 (+) True CI01000016_07969424_07983149
TU111324 lncRNA upstream 124604 7964637 ~ 7964680 (+) True G97828
TU111329 lncRNA upstream 130963 7958249 ~ 7959322 (+) False CI01000016_07956184_07965721
TU111284 lncRNA upstream 183727 7906224 ~ 7906558 (+) True G97788
TU111646 lncRNA downstream 159794 8250388 ~ 8261533 (+) True G98116
TU111684 lncRNA downstream 252517 8343111 ~ 8343467 (+) True G98151
TU111685 lncRNA downstream 256098 8346692 ~ 8346893 (+) True G98152
TU111688 lncRNA downstream 267429 8358023 ~ 8358279 (+) True G98155
TU111633 lncRNA downstream 268051 8358645 ~ 8374582 (+) True G98103
CI01000016_08034844_08037586.mRNA mRNA upstream 52260 8034844 ~ 8038025 (+) True CI01000016_08034844_08037586
CI01000016_07998560_08008403.mRNA mRNA upstream 81839 7998560 ~ 8008446 (+) True CI01000016_07998560_08008403
CI01000016_07969424_07983149.mRNA mRNA upstream 106984 7968328 ~ 7983301 (+) False CI01000016_07969424_07983149
CI01000016_07956184_07965721.mRNA mRNA upstream 124345 7956071 ~ 7965940 (+) False CI01000016_07956184_07965721
CI01000016_07937188_07955977.mRNA mRNA upstream 133828 7937188 ~ 7956457 (+) True CI01000016_07937188_07955977
CI01000016_08092843_08098938.mRNA mRNA downstream 2179 8092773 ~ 8098938 (+) True CI01000016_08092843_08098938
CI01000016_08205087_08210367.mRNA mRNA downstream 114260 8204854 ~ 8211114 (+) True CI01000016_08205087_08210367
CI01000016_08217170_08228700.mRNA mRNA downstream 126490 8217084 ~ 8228778 (+) True CI01000016_08217170_08228700
CI01000016_08270091_08279026.mRNA mRNA downstream 178126 8268720 ~ 8279924 (+) False CI01000016_08270091_08279026
CI01000016_08285505_08286793.mRNA mRNA downstream 194565 8285159 ~ 8287361 (+) True CI01000016_08285505_08286793
TU111320 other upstream 74510 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 304562 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 928995 7160641 ~ 7161290 (+) True G96389
TU109033 other upstream 2682422 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU111822 other downstream 905504 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 1705037 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 1833824 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 2143806 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 2203797 10294391 ~ 10298904 (+) True G99456

Expression Profile