RNA id: CI01000016_08628196_08630801.mRNA



Basic Information


Item Value
RNA id CI01000016_08628196_08630801.mRNA
length 1719
RNA type mRNA
GC content 0.43
exon number 4
gene id CI01000016_08628196_08630801
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8628196 ~ 8631378 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAAAACAAAGTAAGAAAAGAAAAACCGTCTTACAAACGGCTACGACGAAAAAACGACTGGACCAGCAGAGGGCTCAAACCAGAGTAAACATCGGCGTTGCTTTTCCACGCTGGAGACAACTGCGGGACTCAAAGGGACTGAAAACTGACGCGATGGTTGCAGTTTTTCTTTTGGATAGTTACGAGAAAACTACAGCATCCACACCTTCGGTGCATGGACTCCTTAAACCACCACCACCAGTTTCGACTAATATTTCCGACCGCAAAGGGCAGGAGATGAAGTCTGAGGGTTTTGGTCTTTGGAGCTCAGTTTCACTTAAACTTGAGCAAGTGCAAGAAGTGGGTGAAGGAAATGATTCGTCCTCCTTCAGTGTGGACATCATACAAGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACCCAGTACATGTGAAGCAGGAAGACACAGATGAGTCTGAGTTTTGGTGCAGTGGCAGCGTGCAGCAAGATCCAGAGATGTCTGGGGGTGTAGAAGCTAGTCACCCAGTTTCACTTAATTTCAACAAATTAAAAGAAGTGGATCATTACTGTGGAAATGGCAAGTAATCTGTAATATTGTTATATGAATTTAATCTTATCATGCTGATATGAAAGACTTATTGGATAGTTTTATGACCTTAAATAAGCACATTAATTAAAAGAATTTAAAAAAAAAAAATGTAGGATTGCACCGATATTAAAATTCTGGTTAAAATACTGGGGCCAGGTGCATAAACTTAGTCTCTATGTTAAGACCGTGTCTTGAAAACTAGTCTGACCAACTAGCAGTTAACTAGGGGTAATCAGTCTTATTAATTACTTAAAGTTATGACCAGTCTTAAAGAAACAAATTAGATGACTAAAGGCTGGAATACAGTACACGACTTTTGCCCCAATTTACATTCTGGACAAGTTGACGCTAGCTGCCGAAAGTCAGAGCCAGTCTGCAGATTGGATATTGACAGATTTCACAGAACATCGTGTAGCGTATGATGGTCACAGACTTCGTCTTTTTTTTTTTATTAGCTTCAAAGTTTGATTACATCCAGTCAGGATATCAAACATGTTTGATATTTTGATCAAACAGTTTATGCAACCGGCCACTGATGTCAGTAATTATTTTCATCACTACCACGTTGTCAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU111759 lncRNA upstream 9342 8618536 ~ 8618854 (+) True G98225
TU111757 lncRNA upstream 14456 8612964 ~ 8613740 (+) True G98223
TU111756 lncRNA upstream 20330 8607402 ~ 8607866 (+) True G98222
TU111755 lncRNA upstream 22756 8605223 ~ 8605440 (+) True G98221
TU111754 lncRNA upstream 23384 8604598 ~ 8604812 (+) True G98220
TU111636 lncRNA downstream 1545 8632923 ~ 8634430 (+) True G98106
TU111764 lncRNA downstream 10810 8642188 ~ 8642410 (+) True G98230
TU111765 lncRNA downstream 11383 8642761 ~ 8642978 (+) True G98231
TU111828 lncRNA downstream 24384 8655762 ~ 8656133 (+) True G98294
TU111842 lncRNA downstream 40380 8671758 ~ 8689219 (+) True G98307
CI01000016_08553934_08565167.mRNA mRNA upstream 62950 8552843 ~ 8565246 (+) True CI01000016_08553934_08565167
CI01000016_08513514_08545976.mRNA mRNA upstream 82059 8513514 ~ 8546137 (+) True CI01000016_08513514_08545976
CI01000016_08450823_08453343.mRNA mRNA upstream 174819 8450628 ~ 8453377 (+) True CI01000016_08450823_08453343
CI01000016_08390421_08396972.mRNA mRNA upstream 230441 8390289 ~ 8397755 (+) False CI01000016_08390421_08396972
CI01000016_08323079_08336573.mRNA mRNA upstream 291509 8323079 ~ 8336687 (+) True CI01000016_08323079_08336573
CI01000016_08675783_08684401.mRNA mRNA downstream 42033 8673411 ~ 8684506 (+) True CI01000016_08675783_08684401
CI01000016_08696516_08734418.mRNA mRNA downstream 65138 8696516 ~ 8734660 (+) True CI01000016_08696516_08734418
CI01000016_08748359_08750572.mRNA mRNA downstream 116981 8748359 ~ 8750736 (+) True CI01000016_08748359_08750572
CI01000016_08752386_08753821.mRNA mRNA downstream 121008 8752386 ~ 8753821 (+) True CI01000016_08752386_08753821
CI01000016_08766170_08768621.mRNA mRNA downstream 134792 8766170 ~ 8768778 (+) True CI01000016_08766170_08768621
TU111320 other upstream 612421 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 842473 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 1466906 7160641 ~ 7161290 (+) True G96389
TU109033 other upstream 3220333 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU111822 other downstream 364720 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 1164253 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 1293040 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 1603022 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 1663013 10294391 ~ 10298904 (+) True G99456

Expression Profile


CI01000016_08628196_08630801.mRNA Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

CI01000016_08628196_08630801.mRNA Expression in each Bioproject

Bar chart with 44 bars.
CI01000016_08628196_08630801.mRNA Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.