RNA id: CI01000016_08817749_08824067.mRNA



Basic Information


Item Value
RNA id CI01000016_08817749_08824067.mRNA
length 542
RNA type mRNA
GC content 0.44
exon number 6
gene id CI01000016_08817749_08824067
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 8817749 ~ 8824078 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGAGGATAGAGAGCAAGCTGGAGATCTCCAAAAGTAAGATGTTTGCCCTGCTCAGTGTCCTTCTGCTTTCGTCACACGTCCTTCCTCTCGTCCAATCACAGACGTGCAATGAAACAACAGAGTACCCTAAAGTCAATCAGTGCTGCAAAAAATGTGAACCAGGACAGTTTCTGGAAAAGAGATGCGAAACCGGCTCACCTGATTCTCAGTGTAGGCCTTGCGGAAAAGGCTACTTCATGGAAGAATATAATACCAATTTCGGCTGGTGCAAACATTGCACAAAGTGCAACAAAGATCATATGAAGTATAAGAGGAACTGTACGGCGACAAAAGATGCCGAGTGTACATGTGATGAAGGCTACAGATGCAAAGACGATTGCATGATGTGTGTAAAAGAACAGACAACTACTCCTGTTACTTTCCATCCTCCTTCTGCTACTAAAACACCACAGGATAATGTGTGGATCTCGCAGACATGCACGATCATGTGGAAGGATCATGTCAGCATCAAAGGGTCAGTGCCACTATAAAAAATGCTCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111853 lncRNA upstream 767 8816414 ~ 8816982 (+) True G98318
TU111852 lncRNA upstream 1509 8815636 ~ 8816240 (+) True G98317
TU111790 lncRNA upstream 17068 8783613 ~ 8800681 (+) True G98256
TU111856 lncRNA upstream 36843 8780567 ~ 8780906 (+) True G98321
TU111855 lncRNA upstream 38986 8778543 ~ 8778763 (+) True G98320
TU111861 lncRNA downstream 21576 8845654 ~ 8847124 (+) True G98326
TU111775 lncRNA downstream 56931 8881009 ~ 8912783 (+) True G98241
TU111806 lncRNA downstream 65764 8889842 ~ 8894794 (+) True G98272
TU111823 lncRNA downstream 119139 8943217 ~ 8945455 (+) True G98289
TU111895 lncRNA downstream 154154 8978232 ~ 8978540 (+) True G98356
CI01000016_08766170_08768621.mRNA mRNA upstream 48971 8766170 ~ 8768778 (+) True CI01000016_08766170_08768621
CI01000016_08752386_08753821.mRNA mRNA upstream 63928 8752386 ~ 8753821 (+) True CI01000016_08752386_08753821
CI01000016_08748359_08750572.mRNA mRNA upstream 67013 8748359 ~ 8750736 (+) True CI01000016_08748359_08750572
CI01000016_08696516_08734418.mRNA mRNA upstream 83089 8696516 ~ 8734660 (+) True CI01000016_08696516_08734418
CI01000016_08675783_08684401.mRNA mRNA upstream 133243 8673411 ~ 8684506 (+) True CI01000016_08675783_08684401
CI01000016_08916022_08916606.mRNA mRNA downstream 90950 8915028 ~ 8916667 (+) True CI01000016_08916022_08916606
CI01000016_09026732_09050431.mRNA mRNA downstream 202654 9026732 ~ 9050838 (+) True CI01000016_09026732_09050431
CI01000016_09138227_09156795.mRNA mRNA downstream 313356 9137434 ~ 9157472 (+) True CI01000016_09138227_09156795
CI01000016_09181426_09182326.mRNA mRNA downstream 357348 9181426 ~ 9182326 (+) True CI01000016_09181426_09182326
CI01000016_09183871_09184200.mRNA mRNA downstream 359298 9183376 ~ 9184427 (+) True CI01000016_09183871_09184200
TU111320 other upstream 801974 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 1032026 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 1656459 7160641 ~ 7161290 (+) True G96389
TU109033 other upstream 3409886 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU111822 other downstream 172020 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 971553 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 1100340 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 1410322 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 1470313 10294391 ~ 10298904 (+) True G99456

Expression Profile