RNA id: CI01000016_09138227_09156795.mRNA



Basic Information


Item Value
RNA id CI01000016_09138227_09156795.mRNA
length 5394
RNA type mRNA
GC content 0.43
exon number 15
gene id CI01000016_09138227_09156795
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9137434 ~ 9157472 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATAAAGAGAAAAGCAACAATCTTTTCTTTTGTCAGTTTTGTATTAATATCAAAGTCATTCAAGTGCACTAGTTTTTGTGAGATGTGTTTTGGTATTGTAGCCTATATGCTTTATATGTTCTCCTGCAATGAGTTTTTGTGATCTAGTTAGAAACTAACCAAGGCCATGATATTTGCACTTTTCTCCTTTTAGGATGTCAGTATATGCTCTTTGTCATTGTACTGGAAGTATCTGATTAGTTTATTGCAGTCTTCCCAAATTGATGATGATTGATCATTTATCTTAACCTTTGTCCATGACATTTAATTGATTTGTATAAGTTTTGTTTAGATTGTGTTTTGCTTGTTTGCTTTAAGATAACAGCTCACTCTGGAGCTGAGCTTGTTCAGATGGTTCAGTATGGTTCAATAAACTTAACAAAAATAATCAATTAAACTAAAGAATTTTGGATTAAAATCTGCATCCAATATTGCTTACTCACCACTCAAAAATATTTTCATCTTAAACCTCAAAGTTTATGCTAGTAATACACAAAATTATACTTTGAAAGGCTTTGCAGATAAAGAGCAAAAATAAGTGTTTCTAAAGTTTTATAATACATCATTGTTCTATGTGTTTTATAATTTATCCTTTCTAATGTGTCATCTGTGCTTCCCACTGACTTTTACAGCTTTTTCTGAGAACTGCTACTTTTTTTTTTTTTTTAGTGTTACGTAAGCTGCTGACGATGCTTAGGTGTATTGACACATTCATACTCGTCTGCCCCTCCCCCTTTGCTCTCACTGTTTCTCATGCCTTTACCTGAGAAATCAGACACACCCAGCATCTTCAACCCCACCAATCACAGCACAGAAGAGAGACGCCCAGACTGTCCACTGTTTCCTGTTTCTGTGAGGCAGAAGCATGCAGTGCCAGAGAGGGTGAGCTTCACTTTGTCTGGAAAGCAAAGAGAAAGAAGGGGAGAGACGGAGAAGCGTCCCCCAAGACACTTCTCAGGTGCACTAGACAGTTTGTGTCAGTCAAGAGCAAACCGTGACCAGCTAATCAGCAAAGGTGACCTACGTGAAGAGACTTGGAAACACCAAAAGATGGACAAACCAAGCGAAAGAGAAGGAGAAGTGGAGCCAGATGCCTATCATTGGACTAGGGAGAGGGAGAAATTTCCTGCAACCAGAAGAAGAGATGGAGAGATGGACTTGAGAGAAAGAGGAAGGCGGAGAGATGGTGATCGACGTGCAAATGGAAAGTCATCAGTGTCAGAGCAGGCTGAATATGGAGGCCGAGACAATGAGAGGAGAAAAGGAGGCACTTTTCCAAGAATGACAAAACCAAGCAGAGAGAAAGATGGAAGGATACTACATTCAGACTATAATAGGGAGCATCACATAGGAAGACAGATGGACATTCTATATGAAAATGAAAGAGAAAGGGAAAGAAGGAGATACAGAGAAATGGACACACTGAGTGAAAGAGAAAGCACAAGATACAGGGAGGAGTTGAAGAGAAATGAAATGAGAAGGCTCGTAAAGGAGGAGCCAGAAAGACGGAGGGAACGAAATAAGGAGTTTGATTCTGAAATGAGAGAAAGAAGGAGAGAAAGTTATCCAGGGGATAATGACCTTTCAGGCATGAGGGAAAGAGAGACATACAGAGAGAGAGACAAACTTAGACAAAGAGACAAGGAAGACAGTAAAATGGAGAAGAGTGGACAAAGTAGTGGAGAGCTGATTTCAGGAAGTGATATCGAAAATAAACAAGGGAGGGCAATGAGAGAGAACCCCGAGGACAGAGAACGAGAAAACACTTCTGAGATTGATAAAGAGAAACTAACGGGAAGAACAGAGGAAGAGCAGGAAGTAAAGAGTGCTCTGAGGGACGAAGAGGGGGGTGAACGCTTTGCTGCTGAGGAGGCAGTTACAAAGAAACCTAGGATAAGGAAAATGTGGCTGGAACCTCGAAGTGAGAGAAAAGAATCCCATTTAGAAGAAGAGTACACACAGAGGGAGAGAGAAAAAGAGAAGTACATCCAAAGATATAAAGAAATCAAGACAACTGGACATGAAGAAGAACCCGAGAGAAAGAAAGAAAACAGGAAAAAGAGTCTTGAGGACAAGTATAGAGAACTTGAAATGGCTGGGGAGTTCGTGAGGGATGTCGAGGTAGAACAAGAGGAGAAATGCATGGAAGGGAATGTGATTTGTGACAGAGAAGCCCTGGAAACAGAGTGGCAGATAGAAAGGGAAAATGTTCCTGATAACATGGAAGAGGAAGAACAGAGAAAGAACAATAGATACGACTATGTGGGGAATGAGGAAGGAAGTGAGGGAGAATCGGAAGCAGAGAAAGGCAGAATGATGTCAGCAGATGATGGATTTGTGACTGTCTCCAGTGGAGGGGATGATGCTGAGGAAGAGGATTTTGAAGACTGCAAAGAATTCTGGGATGGTGGAGTTGCTGATGATGTCTCTGGAAACTCAGGAGCTACTCAGGGCAGAGAGATCGGGACAGATGAAGAACTGGAAAACCAAACAGCGAATAAGAGAGCAGATCGTAGGGCTCCAAAAGGACCCCCAAAAGTTTTTTGTGTGATTTCTCAGACCCTTCCCAAGTCCCTAACTAAACAGAATGCGTATGAAGATACTACTGTTGAAGAAGCAGGCAATCAGCATTCAAGTCAAAATATGGACAACCAAGGTGAAATGAGCACTGCTAATGCATTTGTAGAGATTGAACACAGTGAACAAGACATTGAAAGTGCGATGGATGACCTCACTCTTTCTCCTAATGAGGACAAAGGGGAGGGAACAGGAATTGATGACCAGGCAAAAGAGGGTGTAACATCACTGGAAGGCCAAATGATTCTTTCCAATGAGGAATCAGAACAAGACACCCAACTCTTCCCAACACAGCCTTCTGAAACTTTATGGCCATGTCATGAGACTCATAATGAAGACACATTACAACTAGGAGAAAAAGAAGTTACTGGAGAAACAGTTAAATATTTTGATTCAGATGACACATGGAGTACATCCGAAGAACGAAAGCGAAGCTCTACTGCTCCTCATCTTCGATGGGCCAAGAACGTGGTGAAAGAGATCCTGGGTCTGAAGTTGGGGGACACAGAAAATACAAGAGACTCTCAGTTGTATCAGGAATACAATGAGGTGGCCCAGAACAGAGAGATCCTGCTGTCTCATACCGATTCTATATCATTAAGTGGCGATAATCTCTCTATCCGTTCATCTTCTTCCCCAAATCATTCCCCTAAGCTATCACACAGACCCCTCCCACCTCTCCCTCAAGTCCTCCTGCACCCCCACACTCTGTCCCAAACCAACTCCTTTAAAAGTCTTAATGTGCCTCAGCAATCCATAGGCAGACCCCCTTCCCCTCGCGTGCCCATCTCTGCTTCCTCACCCACACTGTGGCAGGAGCTCCCGGGAGTGAGGAAGAGCTCAGATTTTGAGATACTCACTGAAGATGAGAGACGTCTGCAGGAGGTGAGGTTTGAGGTCGTGACCTCTGAGGCATCATACTGCCGCAGTTTGGACATCGTAGTGGAGAACTTTGTCATGTCCAAACCGCTCAACGTTATCCTGTCTTCACAAGACAAAAACTGGCTGTTCTCCAGGCTAATTGATGTTAGAGCCACCAGTCACAGTTTTCTGTCTCAACTGGAAGAAACAGTGGAGAAGGACATAATGCACTTTACCGTCTGCGACATTATTATCAAACACTGTCCACGATTCCGAAAGGTCTATGTGCCATACCTTACCAACCAATCATATCAGGACAAGACGTATCAAAGATTAATGGATGAGAGTCACGAATTCCGTAGAGTTGTGGAAAAGTTAGAGCGTAACCCGGTTTGTCAACGACTGCCTTTACGGTCTTTCCTCATTCTGCCGTTCCAAAGAATCACTCGCCTCAAACTGCTAGTGCAGAATATTGTAAAGAGAACCGCTTCAAAGACCAAGGATGAAGCACAGGCCATAAAGGCCATGAAACTACTTGAGAAGATGATCCAGGAGAGTAATGAAAGTATCTCTCAAATGAAGAACATTGAGTCACTTGTGACTCTCAATGCCAAAGTTGACTTTGAGTGTAGGACTCTTCCGTTGATCAGTCAGTCCCGCAGACTGGTACGAGAGGGATCTGTGACTGAACTGAGAGACTTTTCCCTGAAAGACAGGGAAGATGAGAGAAACGCTTATATGCACCTTTTTAATGACTATCTCCTGCTCTCTTTGCGGAAAGAAGGGGGTAGGTTTACAGTTATCGATCATGCTCCAGTGTCAGAGCTGCGGGTTGAGAACTGCAGGTTCAAACTGCATTCCTTACAGAAAAACCTGTTCCGTCTGCACATGTCGCAAAAAGCCCTGCTTTTGAAGACAGATACAGAAGCTGATAAACTACGTTGGATATCAGCACTCTCACGTCCTTATCCTGAGATTGACTTCAGCGCAGTTCAGGACTTTGCACAAATGCAGTGCATCAGAGCCTTTGTTGCCCAGCAACCAGATGAACTCAGTTTAGAGAAAGCTGACGTTCTATTAGTTCACCAGCAGAGTAGTGATGGCTGGGTGGAAGGAACTCGTCTGTCAGACAGGCAACGAGGCTGGGCCCCTGAGGCTCACCTGGAGACAATAGTCAGCGACAAAACAAGAAAGCGCAACCTTCTGGACACCATGAGAATTGCTACAGCTGCAATGTGAATTAATATGTACATCCTACATGGTTCTCAGGTGGACATTTTCAACCACAATTTTTTAGTGTTACTTTAAAGTCTTATCCAAAAAGACCTTCAAGAACTTGGATTTATGTGGGAAGTTTCTATTTATTTTGTGTAGATACTCGAGCTGATAAGGGTGATGTGGGCGATATGGTCACACCCATGTCATGGTACTCCACACCCTGAGAAAGGGTCTGGAAAGATGCTGAATTGCACCAACAGAGCTCTTTGGATATCTCATGATTTTGTGCAAATGGTGCAATCAAATGAGTATCTATGCAGCTTCCACAGTGTTTATGTAAACATCATGTAAAGTCTTTATTATAACTTGGAAGTTGGGTGTCACTCCTGGACAGACAATTGGACCACAGTCTGTTTTCCTCTTAATGAGCGAGTTATCTCACTGAGGAGCAACTACAGCTGGATATAAAACAATGGAATCAGTGAGAAATTCTGAATACTGCACACCTGCAATTTATAAACATTACATCCCTTTCAACATGGAATATACATTCTGACTGCAGCCTCAAATACGATTTAAAGAGGATACTGTCGTGCTCCAGGACAAAGATGCAAAAAGGACAAATGGTGAACTTTTCCTTAAACAAATTGTGCTAATTTTATTCAGGATCATGAATTATAGATGGCTAATTTTTAAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111929 lncRNA upstream 11503 9125719 ~ 9125931 (+) True G98385
TU111914 lncRNA upstream 39331 9085228 ~ 9098103 (+) True G98375
TU111901 lncRNA upstream 147973 8989238 ~ 8989461 (+) True G98362
TU111895 lncRNA upstream 158894 8978232 ~ 8978540 (+) True G98356
TU111823 lncRNA upstream 191979 8943217 ~ 8945455 (+) True G98289
TU111939 lncRNA downstream 17727 9175199 ~ 9175960 (+) False G98391
TU111936 lncRNA downstream 17960 9175432 ~ 9175960 (+) False G98391
TU111937 lncRNA downstream 17960 9175432 ~ 9175912 (+) True G98391
TU111940 lncRNA downstream 53878 9211350 ~ 9211766 (+) True G98392
TU111814 lncRNA downstream 66977 9224449 ~ 9226908 (+) True G98280
CI01000016_09026732_09050431.mRNA mRNA upstream 86596 9026732 ~ 9050838 (+) True CI01000016_09026732_09050431
CI01000016_08916022_08916606.mRNA mRNA upstream 220767 8915028 ~ 8916667 (+) True CI01000016_08916022_08916606
CI01000016_08817749_08824067.mRNA mRNA upstream 313356 8817749 ~ 8824078 (+) True CI01000016_08817749_08824067
CI01000016_08766170_08768621.mRNA mRNA upstream 368656 8766170 ~ 8768778 (+) True CI01000016_08766170_08768621
CI01000016_08752386_08753821.mRNA mRNA upstream 383613 8752386 ~ 8753821 (+) True CI01000016_08752386_08753821
CI01000016_09181426_09182326.mRNA mRNA downstream 23954 9181426 ~ 9182326 (+) True CI01000016_09181426_09182326
CI01000016_09183871_09184200.mRNA mRNA downstream 25904 9183376 ~ 9184427 (+) True CI01000016_09183871_09184200
CI01000016_09228083_09231481.mRNA mRNA downstream 70611 9228083 ~ 9231635 (+) True CI01000016_09228083_09231481
CI01000016_09240403_09243601.mRNA mRNA downstream 82273 9239745 ~ 9243601 (+) True CI01000016_09240403_09243601
CI01000016_09259876_09260073.mRNA mRNA downstream 102169 9259641 ~ 9260201 (+) True CI01000016_09259876_09260073
TU111822 other upstream 134717 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 1121659 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 1351711 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 1976144 7160641 ~ 7161290 (+) True G96389
TU109031 other upstream 3729571 5406748 ~ 5406829 (+) True G95870
TU112665 other downstream 638159 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 766946 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 1076928 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 1136919 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 2514173 11671645 ~ 11672873 (+) True G99940

Expression Profile