RNA id: CI01000016_09228083_09231481.mRNA


Basic Information

Item Value
RNA id CI01000016_09228083_09231481.mRNA
length 724
RNA type mRNA
GC content 0.42
exon number 5
gene id CI01000016_09228083_09231481
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9228083 ~ 9231635 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGATGGACAAAATAATTTTAACATCTGCCGAGCCAAGCCTTCACAGTAGAGTATTGAATCCTCAACGACCCAGGATGAGAGGCATAACGGCAATGGTTTTCCTGGCCTTATGTGCGCTGCTGATTATAGTCTACCAGGCCGTACAGCAGGAGCTCAACATTCGCAACCTGAAAACACGCATCGTTGTTTCTGGTGAACAGGTGAAGTTGAAGGAGGATGGAATCATGGCAACTAAGACGAAAGTGGAGGAGATCAATAAAAAGCTTAGTGCTCTGACCACACAGAGGGATCAGCTCAAAAAACAGAAGGATGACATTAAGAAAGGCACTGCTGAATCTGAAAAGGAACTCAGCACCTGCAATGCTGAGAAGGGTACATTAGAGAAGAAGAGCAATGAAGCAAAAGACGCACTTAAGAAACTAAAGGAAGACCAAGAAGCTGAAAAGAAGAAAGCTGAGGAGGAGATTCAGGGTCTGAAACAAAGCATTCTAGAGAGAGATGTAAAGATCTGCAAATTTGTGGATGTAGCCGTGGAAGAGGCAAAGAAGTTGTGCGCAGTTGCCCTGTGAAGGGATTTCAGAAGTCTAATGGAGTTCTCTCAGGAAAAATGTTTTGGATGGGATTGTGTATATTTGTTTCTACAAACCCTTTTTGACTTTGTTATATGTTACATATGTTTCATAAAAAAGGTATGGATGTGCTGCTTTATGAACAATGCACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111814 lncRNA upstream 1175 9224449 ~ 9226908 (+) True G98280
TU111940 lncRNA upstream 16317 9211350 ~ 9211766 (+) True G98392
TU111939 lncRNA upstream 52123 9175199 ~ 9175960 (+) False G98391
TU111936 lncRNA upstream 52123 9175432 ~ 9175960 (+) False G98391
TU111937 lncRNA upstream 52171 9175432 ~ 9175912 (+) True G98391
TU111824 lncRNA downstream 94739 9326374 ~ 9375553 (+) True G98290
TU111805 lncRNA downstream 144582 9376217 ~ 9378050 (+) True G98271
TU111962 lncRNA downstream 168320 9399955 ~ 9402046 (+) True G98409
TU111970 lncRNA downstream 172232 9403867 ~ 9404218 (+) True G98414
TU111971 lncRNA downstream 172732 9404367 ~ 9404679 (+) True G98415
CI01000016_09183871_09184200.mRNA mRNA upstream 43656 9183376 ~ 9184427 (+) True CI01000016_09183871_09184200
CI01000016_09181426_09182326.mRNA mRNA upstream 45757 9181426 ~ 9182326 (+) True CI01000016_09181426_09182326
CI01000016_09138227_09156795.mRNA mRNA upstream 70611 9137434 ~ 9157472 (+) True CI01000016_09138227_09156795
CI01000016_09026732_09050431.mRNA mRNA upstream 177245 9026732 ~ 9050838 (+) True CI01000016_09026732_09050431
CI01000016_08916022_08916606.mRNA mRNA upstream 311416 8915028 ~ 8916667 (+) True CI01000016_08916022_08916606
CI01000016_09240403_09243601.mRNA mRNA downstream 8110 9239745 ~ 9243601 (+) True CI01000016_09240403_09243601
CI01000016_09259876_09260073.mRNA mRNA downstream 28006 9259641 ~ 9260201 (+) True CI01000016_09259876_09260073
CI01000016_09266373_09278553.mRNA mRNA downstream 33930 9265565 ~ 9279131 (+) True CI01000016_09266373_09278553
CI01000016_09299769_09306497.mRNA mRNA downstream 68134 9299769 ~ 9307385 (+) True CI01000016_09299769_09306497
CI01000016_09317824_09332379.mRNA mRNA downstream 86087 9317722 ~ 9332714 (+) True CI01000016_09317824_09332379
TU111822 other upstream 225366 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 1212308 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 1442360 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 2066793 7160641 ~ 7161290 (+) True G96389
TU109031 other upstream 3820220 5406748 ~ 5406829 (+) True G95870
TU112665 other downstream 563996 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 692783 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 1002765 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 1062756 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 2440010 11671645 ~ 11672873 (+) True G99940

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00019611 False 877 mRNA 0.39 5 NC_007127.7 17714664 ~ 17719700 (+)