RNA id: CI01000016_09259876_09260073.mRNA



Basic Information


Item Value
RNA id CI01000016_09259876_09260073.mRNA
length 561
RNA type mRNA
GC content 0.43
exon number 1
gene id CI01000016_09259876_09260073
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9259641 ~ 9260201 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATATTATTAAGCTCATGTTAATTGATGTACATTAAATGTTTTTTGGATTATGGCAGTAAACTCACCCTCAGTTTTCATCTCTTTCCCATTATTCTCCAGCTACCTCTTCAGTGGTGACACAGAGTTCTCTTTGGGACTAACTGGAGTTTGGTAGACATTAGTGCTCCTGTCAGACACAAACCTGAAGTTTGGATGACATTGATGCTCCAATCCAACATGGTATGGACTGGAGAATGGCTGGCATTGATGTTTCAGTCGGAAGAGGTGCGATGGACTGGAGTCTGGGTGACATTGACACTCCGGTTGGATGCAGTGCAATGTATTGGAGTCAGGGTGACAGAAATCTGGGTGATGTCAGCACACCAGACAGATGTGGCATGGACTGGATTCTGGACATCAACATTGCTCCAGTTCGATGCAGTGTTGACTAAAGGCAGGCCAGCAATGACATTCTAGATGGTTCTAATAATGGCACCTCTGTGCAACATTAAACAGTCTTTAAATGCAGACTTTAAACAAAAAAAGTTACCATGGAGCCCTAGATGGTTGTACAACTCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111814 lncRNA upstream 32733 9224449 ~ 9226908 (+) True G98280
TU111940 lncRNA upstream 47875 9211350 ~ 9211766 (+) True G98392
TU111939 lncRNA upstream 83681 9175199 ~ 9175960 (+) False G98391
TU111824 lncRNA downstream 66173 9326374 ~ 9375553 (+) True G98290
TU111805 lncRNA downstream 116016 9376217 ~ 9378050 (+) True G98271
TU111962 lncRNA downstream 139754 9399955 ~ 9402046 (+) True G98409
TU111970 lncRNA downstream 143666 9403867 ~ 9404218 (+) True G98414
TU111971 lncRNA downstream 144166 9404367 ~ 9404679 (+) True G98415
CI01000016_09240403_09243601.mRNA mRNA upstream 16040 9239745 ~ 9243601 (+) True CI01000016_09240403_09243601
CI01000016_09228083_09231481.mRNA mRNA upstream 28006 9228083 ~ 9231635 (+) True CI01000016_09228083_09231481
CI01000016_09183871_09184200.mRNA mRNA upstream 75214 9183376 ~ 9184427 (+) True CI01000016_09183871_09184200
CI01000016_09181426_09182326.mRNA mRNA upstream 77315 9181426 ~ 9182326 (+) True CI01000016_09181426_09182326
CI01000016_09138227_09156795.mRNA mRNA upstream 102169 9137434 ~ 9157472 (+) True CI01000016_09138227_09156795
CI01000016_09266373_09278553.mRNA mRNA downstream 5364 9265565 ~ 9279131 (+) True CI01000016_09266373_09278553
CI01000016_09299769_09306497.mRNA mRNA downstream 39568 9299769 ~ 9307385 (+) True CI01000016_09299769_09306497
CI01000016_09317824_09332379.mRNA mRNA downstream 57521 9317722 ~ 9332714 (+) True CI01000016_09317824_09332379
CI01000016_09340494_09349036.mRNA mRNA downstream 80293 9340494 ~ 9349036 (+) True CI01000016_09340494_09349036
CI01000016_09357617_09361063.mRNA mRNA downstream 97416 9357617 ~ 9361063 (+) True CI01000016_09357617_09361063
TU111822 other upstream 256924 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 1243866 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 1473918 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 2098351 7160641 ~ 7161290 (+) True G96389
TU109031 other upstream 3851778 5406748 ~ 5406829 (+) True G95870
TU112665 other downstream 535430 9795631 ~ 9795684 (+) True G99016
TU112690 other downstream 664217 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 974199 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 1034190 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 2411444 11671645 ~ 11672873 (+) True G99940

Expression Profile