RNA id: TU112509


Basic Information

Item Value
RNA id TU112509
length 261
lncRNA type sense_over
GC content 0.41
exon number 1
gene id CI01000016_09475913_09487996
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9474997 ~ 9488292 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCTTTCAAAATCAATATTAGCTAGCATCTATTGTGCACTCAGCAGTGGTTTGTGTATGGTGGCGGTGATGGAAAGTGAAGGGAGTTGTACAGATTCTACTGTATGGGCCTATTACATTTCTCCATTATCGCCATTACAGATAAAGTGTAAATGGATGTAATCATGGTTATAACAGTGACTTACCACTATAGAAAGAGGTGGGATGTGGTTTGGCACCTTCGGCACACCATTCTCTCCTAATTCCCTGTAGTATGATGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112490 lncRNA downstream 78014 9356362 ~ 9397519 (-) True G98853
TU112441 lncRNA downstream 130085 9344604 ~ 9345448 (-) True G98808
TU112472 lncRNA downstream 149293 9325886 ~ 9326240 (-) True G98838
TU112442 lncRNA downstream 149835 9325167 ~ 9325698 (-) True G98809
TU112430 lncRNA downstream 151038 9322852 ~ 9324495 (-) True G98802
TU112515 lncRNA upstream 4601 9480394 ~ 9480627 (-) True G98878
TU112522 lncRNA upstream 13772 9489565 ~ 9489806 (-) True G98885
TU112524 lncRNA upstream 17850 9493643 ~ 9493939 (-) True G98887
TU112537 lncRNA upstream 37972 9513765 ~ 9513998 (-) True G98898
TU112540 lncRNA upstream 42586 9518379 ~ 9518655 (-) True G98901
CI01000016_09410080_09416286.mRNA mRNA downstream 57766 9409906 ~ 9417767 (-) True CI01000016_09410080_09416286
CI01000016_09384358_09401878.mRNA mRNA downstream 73655 9384162 ~ 9401878 (-) True CI01000016_09384358_09401878
CI01000016_09376209_09382250.mRNA mRNA downstream 93283 9376209 ~ 9382250 (-) True CI01000016_09376209_09382250
CI01000016_09251602_09253351.mRNA mRNA downstream 222182 9251412 ~ 9253351 (-) True CI01000016_09251602_09253351
CI01000016_09224593_09226660.mRNA mRNA downstream 248873 9224467 ~ 9226660 (-) True CI01000016_09224593_09226660
CI01000016_09510177_09512196.mRNA mRNA upstream 33866 9509659 ~ 9512365 (-) False CI01000016_09510177_09512196
CI01000016_09638800_09651752.mRNA mRNA upstream 162799 9638592 ~ 9651752 (-) True CI01000016_09638800_09651752
CI01000016_09654611_09661197.mRNA mRNA upstream 177709 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_09739013_09746676.mRNA mRNA upstream 263220 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09959197_09962175.mRNA mRNA upstream 482129 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
TU112308 other downstream 217922 9256102 ~ 9257611 (-) True G98691
TU112296 other downstream 235604 9234996 ~ 9239929 (-) True G98679
TU112294 other downstream 530304 8936789 ~ 8936818 (-) True G98677
TU112287 other downstream 580796 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU110786 other downstream 3315812 6158986 ~ 6159721 (-) True G97341
TU112534 other upstream 33829 9511357 ~ 9511415 (-) False G98896
TU112533 other upstream 33858 9511357 ~ 9511415 (-) False G98896
TU112535 other upstream 33858 9511357 ~ 9511415 (-) True G98896
TU112845 other upstream 338568 9814361 ~ 9814955 (-) True G99178
TU114011 other upstream 575375 10051168 ~ 10052389 (-) True G100190

Expression Profile