Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU112665 |
| length | 54 |
| RNA type | TUCP |
| GC content | 0.49 |
| exon number | 1 |
| gene id | G99016 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 9795631 ~ 9795684 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU112673 | lncRNA | upstream | 9068 | 9785610 ~ 9786563 (+) | True | G99024 |
| TU112672 | lncRNA | upstream | 22407 | 9769865 ~ 9773224 (+) | True | G99023 |
| TU112671 | lncRNA | upstream | 25907 | 9765978 ~ 9769724 (+) | True | G99022 |
| TU112661 | lncRNA | upstream | 47370 | 9747983 ~ 9748261 (+) | True | G99013 |
| TU112592 | lncRNA | upstream | 197917 | 9597475 ~ 9597714 (+) | True | G98953 |
| TU112683 | lncRNA | downstream | 59572 | 9856512 ~ 9856848 (+) | True | G99034 |
| TU112689 | lncRNA | downstream | 67063 | 9864003 ~ 9864223 (+) | True | G99040 |
| TU112706 | lncRNA | downstream | 102613 | 9899553 ~ 9900079 (+) | False | G99056 |
| TU112705 | lncRNA | downstream | 102715 | 9899655 ~ 9900079 (+) | True | G99056 |
| TU112715 | lncRNA | downstream | 123327 | 9920267 ~ 9920479 (+) | True | G99062 |
| CI01000016_09788926_09791625.mRNA | mRNA | upstream | 3708 | 9788926 ~ 9791923 (+) | True | CI01000016_09788926_09791625 |
| CI01000016_09748780_09759954.mRNA | mRNA | upstream | 35248 | 9748780 ~ 9760383 (+) | True | CI01000016_09748780_09759954 |
| CI01000016_09731997_09734823.mRNA | mRNA | upstream | 60808 | 9731997 ~ 9734823 (+) | True | CI01000016_09731997_09734823 |
| CI01000016_09686132_09706397.mRNA | mRNA | upstream | 89178 | 9686132 ~ 9706453 (+) | True | CI01000016_09686132_09706397 |
| CI01000016_09664848_09674309.mRNA | mRNA | upstream | 120903 | 9664848 ~ 9674728 (+) | True | CI01000016_09664848_09674309 |
| CI01000016_09868120_09886212.mRNA | mRNA | downstream | 71136 | 9868076 ~ 9886233 (+) | True | CI01000016_09868120_09886212 |
| CI01000016_09897221_09902690.mRNA | mRNA | downstream | 99906 | 9896846 ~ 9902882 (+) | True | CI01000016_09897221_09902690 |
| CI01000016_09934128_09954587.mRNA | mRNA | downstream | 137188 | 9934128 ~ 9955328 (+) | True | CI01000016_09934128_09954587 |
| CI01000016_09970010_09999304.mRNA | mRNA | downstream | 172975 | 9969915 ~ 10000721 (+) | False | CI01000016_09970010_09999304 |
| CI01000016_10042324_10051398.mRNA | mRNA | downstream | 245076 | 10042016 ~ 10052367 (+) | True | CI01000016_10042324_10051398 |
| TU111822 | other | upstream | 792914 | 8996098 ~ 9002717 (+) | True | G98288 |
| TU111320 | other | upstream | 1779856 | 8014363 ~ 8015775 (+) | True | G97824 |
| TU111256 | other | upstream | 2009908 | 7785226 ~ 7785723 (+) | True | G97766 |
| TU109637 | other | upstream | 2634341 | 7160641 ~ 7161290 (+) | True | G96389 |
| TU109033 | other | upstream | 4387768 | 5405869 ~ 5407863 (+) | False | CI01000016_05405791_05407797 |
| TU112690 | other | downstream | 127478 | 9924418 ~ 9925654 (+) | True | G99041 |
| TU113122 | other | downstream | 437460 | 10234400 ~ 10236851 (+) | True | G99410 |
| TU113168 | other | downstream | 497451 | 10294391 ~ 10298904 (+) | True | G99456 |
| TU113731 | other | downstream | 1874705 | 11671645 ~ 11672873 (+) | True | G99940 |
| TU113986 | other | downstream | 2363701 | 12160641 ~ 12162845 (+) | False | G100178 |
