RNA id: CI01000016_09868120_09886212.mRNA



Basic Information


Item Value
RNA id CI01000016_09868120_09886212.mRNA
length 1649
RNA type mRNA
GC content 0.45
exon number 10
gene id CI01000016_09868120_09886212
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9868076 ~ 9886233 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCATAAAAGGAGATTTGGCAGTCTGTACCTGCTTTGCCATAAAGATGAAGATCACTGTTCTTCTGCATCTGACTCTATTGCTGGTGAGGACTTCAAGCCTTGAAGATTCATCTGTGGATAAATCAATAGATATTTCTGGTGGCAGCAGTCCGCATGTAAACTCTGTTCAGCATGGAGAATGTAGCTACACCTTCATACTGCCAGAACCTGAGGAGAGCAGGACTGGTAGCTGGACAGAAGAACATGAGGGTAATTATGAAGGTAACAGTGTCCAGAAAGAATCTCCACAGGGGAAGCAAAGCCACTTAAACCAGAGGATCCAACACCTGGAGCTTGCCATGGAAAATTACACCCGCTGGATCCAAAAGTCTAACACAACACACTCTCATGACAATTCTTCACTGAGAAAAATAATTGTAATTTTAAAGATTGAGGTCTTTGTAAAGGACTTTCTGACAAAAGACACAACACACCTGCGGAATAGTGCTCTCCATAATGAAATGACAGCCATGCTGGATCTTGGCACCAAACTGTTTTCCCAGTCAACCCAACACATCAGGAGACTAACAGACATACAGACACAGGTTTTCAATCAGACTTCTAGACTTGAGATTAAGTCACTGGAAAACTCCCTGTCCTCCAGCAAACTTGAGAACAAACTCCTCTGGCAAACCAGTGAGATCAACCAACTCTGGGACAAAACAAGTACACTAGAGCAGCGTATGCATAACTTGGAGGCACGTCACCATGCAGAACTGGGCTGGATAAAGGGTGAGCGGACAGAGCTTCAGAGACTCTTGGCATCCCAGAGATCTTCAATACAGAGCCTGGAGCTTAATCTAGAGGAGGTCGTCACAAACAACAGCGCCCTCTACCGAGAACAACTACAAATGCATAGTACCATCAATGATCTGTTTAAACTGTGCTCCAAGAACAAAGTGAGTCCAAATGTTTTCAAGCAAATGGATGATCAGATAAAATACAGAGACTGTGCCGAACTCTTCAGGGCTGGATTTAACAGGAGTGGAATTTACACCATCTACATTAGCACGCAAGACATGCATAAGGTTTATTGCAACATGGAAAGTGCTGGTGGGGGCTGGACCATCATACAATCAAGGACAGATGGAACGCTGGACTTCCACAGAACCTGGATAGAGTATAAGATGGGCTTTGGGAGTCTGACTGGAGAGCATTGGTTGGGAAATGAGCTGGTGTACCAGTTGACCAATCAGAGGCAGTACACTCTTAGACTGGAGTTGACAGACTGGGATGGAAAACTGGCCTTCTCCCAGTATGACAAGTTTTACCTTGGTAGTGAGAAGCAAAACTACAGGTTATTCCTGAAGAGCTACAGTGGTACAGCTGGCAGGCAGAGCAGTTTGGTGATAAATGGGGCCGACTTTAGCACAAAAGACATGGATAACGACAACTGTATCTGCAAGTGTGCACTCATGCTCACAGGTGGCTGGTGGTTTGATGCCTGTGGCCCATCAAACCTCAACGGCATGTACTACACCTCTGGGCAAAATTCTGGCAAACTTGATGGCATCAAGTGGCACTACTTCAAAGGCCCCAACTACTCTTTACGTGCCACCACCATGATGATCCGCCCATTAAACTTTTGAGGAATCAATCATCTGTCATCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU112689 lncRNA upstream 3853 9864003 ~ 9864223 (+) True G99040
TU112683 lncRNA upstream 11228 9856512 ~ 9856848 (+) True G99034
TU112673 lncRNA upstream 81513 9785610 ~ 9786563 (+) True G99024
TU112672 lncRNA upstream 94852 9769865 ~ 9773224 (+) True G99023
TU112671 lncRNA upstream 98352 9765978 ~ 9769724 (+) True G99022
TU112706 lncRNA downstream 13320 9899553 ~ 9900079 (+) False G99056
TU112705 lncRNA downstream 13422 9899655 ~ 9900079 (+) True G99056
TU112715 lncRNA downstream 34034 9920267 ~ 9920479 (+) True G99062
TU112716 lncRNA downstream 34948 9921181 ~ 9940824 (+) True G99063
TU112942 lncRNA downstream 84508 9970741 ~ 9971353 (+) False CI01000016_09970010_09999304
CI01000016_09796196_09842235.mRNA mRNA upstream 25500 9795950 ~ 9842576 (+) False CI01000016_09796196_09842235
CI01000016_09788926_09791625.mRNA mRNA upstream 76153 9788926 ~ 9791923 (+) True CI01000016_09788926_09791625
CI01000016_09748780_09759954.mRNA mRNA upstream 107693 9748780 ~ 9760383 (+) True CI01000016_09748780_09759954
CI01000016_09731997_09734823.mRNA mRNA upstream 133253 9731997 ~ 9734823 (+) True CI01000016_09731997_09734823
CI01000016_09686132_09706397.mRNA mRNA upstream 161623 9686132 ~ 9706453 (+) True CI01000016_09686132_09706397
CI01000016_09897221_09902690.mRNA mRNA downstream 10613 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09934128_09954587.mRNA mRNA downstream 47895 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09970010_09999304.mRNA mRNA downstream 83682 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_10042324_10051398.mRNA mRNA downstream 155783 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_10333877_10334229.mRNA mRNA downstream 447644 10333877 ~ 10334346 (+) True CI01000016_10333877_10334229
TU112665 other upstream 71136 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 865359 8996098 ~ 9002717 (+) True G98288
TU111320 other upstream 1852301 8014363 ~ 8015775 (+) True G97824
TU111256 other upstream 2082353 7785226 ~ 7785723 (+) True G97766
TU109637 other upstream 2706786 7160641 ~ 7161290 (+) True G96389
TU112690 other downstream 38185 9924418 ~ 9925654 (+) True G99041
TU113122 other downstream 348167 10234400 ~ 10236851 (+) True G99410
TU113168 other downstream 408158 10294391 ~ 10298904 (+) True G99456
TU113731 other downstream 1785412 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 2274408 12160641 ~ 12162845 (+) False G100178

Expression Profile