RNA id: TU112937


Basic Information

Item Value
RNA id TU112937
length 288
lncRNA type sense_over
GC content 0.32
exon number 1
gene id CI01000016_09959197_09962175
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 9957922 ~ 9963244 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAATAGCCTAGTTTGTTATTCGGTAGCCTACAAATAGCCCATGCCTATCCATTAGAACACAAAGAGCAAAACGAACGCTGGTTTAAAGTGAATATTTACCAATAAATAGTCTAAATAAATAAATAAATTAAAAAAATTAAACCAAACCGAAACGATCGGTCATTTTCTAAAAAAAAAAAAAAAAAAATCAAAAATGTATATGCTTTATAGGCACAAATGATCGCATCACAAGTGCTTCCACCAGAACTCGATTCTGTATTCTTCAAAAAGCTTACGCTGAATGTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU112898 lncRNA downstream 44781 9917896 ~ 9918176 (-) True G99225
TU112890 lncRNA downstream 74807 9887657 ~ 9888150 (-) True G99217
TU112889 lncRNA downstream 75370 9887373 ~ 9887587 (-) True G99216
TU112873 lncRNA downstream 107128 9855622 ~ 9855829 (-) True G99204
TU112870 lncRNA downstream 110520 9852206 ~ 9852437 (-) True G99201
TU114030 lncRNA upstream 40512 10003756 ~ 10003959 (-) True G100209
TU114034 lncRNA upstream 52909 10016153 ~ 10016831 (-) True G100213
TU114035 lncRNA upstream 53712 10016956 ~ 10017211 (-) True G100214
TU114036 lncRNA upstream 54552 10017796 ~ 10018869 (-) True G100215
TU114037 lncRNA upstream 57559 10020803 ~ 10021100 (-) True G100216
CI01000016_09739013_09746676.mRNA mRNA downstream 216281 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09654611_09661197.mRNA mRNA downstream 301760 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_09638800_09651752.mRNA mRNA downstream 311205 9638592 ~ 9651752 (-) True CI01000016_09638800_09651752
CI01000016_09510177_09512196.mRNA mRNA downstream 450592 9509659 ~ 9512365 (-) False CI01000016_09510177_09512196
CI01000016_09475913_09487996.mRNA mRNA downstream 474665 9474997 ~ 9488292 (-) False CI01000016_09475913_09487996
CI01000016_10025722_10027148.mRNA mRNA upstream 62258 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
CI01000016_10089136_10135299.mRNA mRNA upstream 125472 10088716 ~ 10135299 (-) True CI01000016_10089136_10135299
CI01000016_10228314_10299064.mRNA mRNA upstream 265070 10228314 ~ 10299064 (-) True CI01000016_10228314_10299064
CI01000016_10386099_10386648.mRNA mRNA upstream 422581 10385825 ~ 10387482 (-) True CI01000016_10386099_10386648
CI01000016_10443526_10488009.mRNA mRNA upstream 479601 10442845 ~ 10488186 (-) True CI01000016_10443526_10488009
TU112845 other downstream 148002 9814361 ~ 9814955 (-) True G99178
TU112535 other downstream 450529 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 450595 9511357 ~ 9511415 (-) False G98896
TU112533 other downstream 450595 9511357 ~ 9511415 (-) False G98896
TU112308 other downstream 705346 9256102 ~ 9257611 (-) True G98691
TU114011 other upstream 87924 10051168 ~ 10052389 (-) True G100190

Expression Profile