RNA id: CI01000016_10333877_10334229.mRNA


Basic Information

Item Value
RNA id CI01000016_10333877_10334229.mRNA
length 470
RNA type mRNA
GC content 0.42
exon number 1
gene id CI01000016_10333877_10334229
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10333877 ~ 10334346 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTGTGTAACAGCACTGATCTTCCTGAGGTGGAAATCATCAGTTTGCTTGAGGAGCAGTTGCCTCATTATAAGCTGAGAGCTGACACAATATACGGCTATGACCACGACGACTGGCTCCACACGCCTCTCATCTCACCCGACGTCAACCTCGACCTGACCACAGAACAGATCGAGGAGACCCTCAAATATTTCCGTAAGCCCAGAATCACTCACTATCATCCTGTTCCTCTATTTTTCTCTCTTTCATCCACTGTTTTTCCTGTGTCTTTCTCTGTCACCCATGAAGTTGTCTTTTCCCTTGACACTGTTTTACTCAAAATAGTAACAACAAATATCTCACACATGCACTGACACACATACGCATAAACATCACATAAACACCATTCATGCATGCTTTAACAGTGCTTTTACATATTGAACATGCATTGGTTGAACATGTGCTCAATAATTAATTTCAATAAGCCTAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113167 lncRNA upstream 34265 10299359 ~ 10299612 (+) True G99455
TU113166 lncRNA upstream 41368 10292300 ~ 10292509 (+) True G99454
TU113165 lncRNA upstream 42585 10291067 ~ 10291292 (+) True G99453
TU113163 lncRNA upstream 47056 10286566 ~ 10286821 (+) True G99451
TU113161 lncRNA upstream 51270 10282363 ~ 10282607 (+) True G99449
TU113173 lncRNA downstream 51492 10385838 ~ 10386651 (+) True G99461
TU113198 lncRNA downstream 139635 10473981 ~ 10474743 (+) True G99484
TU113074 lncRNA downstream 182128 10516474 ~ 10522566 (+) True G99362
TU113077 lncRNA downstream 236356 10570702 ~ 10572556 (+) True G99365
TU113091 lncRNA downstream 259689 10594035 ~ 10594264 (+) True G99379
CI01000016_10042324_10051398.mRNA mRNA upstream 281510 10042016 ~ 10052367 (+) True CI01000016_10042324_10051398
CI01000016_09970010_09999304.mRNA mRNA upstream 333156 9969915 ~ 10000721 (+) False CI01000016_09970010_09999304
CI01000016_09934128_09954587.mRNA mRNA upstream 378549 9934128 ~ 9955328 (+) True CI01000016_09934128_09954587
CI01000016_09897221_09902690.mRNA mRNA upstream 430995 9896846 ~ 9902882 (+) True CI01000016_09897221_09902690
CI01000016_09868120_09886212.mRNA mRNA upstream 447644 9868076 ~ 9886233 (+) True CI01000016_09868120_09886212
CI01000016_10339126_10370881.mRNA mRNA downstream 912 10335258 ~ 10372651 (+) True CI01000016_10339126_10370881
CI01000016_10421936_10422623.mRNA mRNA downstream 86229 10420575 ~ 10424516 (+) True CI01000016_10421936_10422623
CI01000016_10508464_10510408.mRNA mRNA downstream 174118 10508464 ~ 10510832 (+) True CI01000016_10508464_10510408
CI01000016_10587199_10588775.mRNA mRNA downstream 252853 10587199 ~ 10588775 (+) True CI01000016_10587199_10588775
CI01000016_10676271_10682495.mRNA mRNA downstream 341741 10676087 ~ 10682839 (+) True CI01000016_10676271_10682495
TU113168 other upstream 34973 10294391 ~ 10298904 (+) True G99456
TU113122 other upstream 97026 10234400 ~ 10236851 (+) True G99410
TU112690 other upstream 408223 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 536937 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1331160 8996098 ~ 9002717 (+) True G98288
TU113731 other downstream 1337299 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 1826295 12160641 ~ 12162845 (+) False G100178

Expression Profile