RNA id: CI01000016_10967556_10968779.mRNA


Basic Information

Item Value
RNA id CI01000016_10967556_10968779.mRNA
length 1082
RNA type mRNA
GC content 0.41
exon number 3
gene id CI01000016_10967556_10968779
representative False

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10967556 ~ 10969416 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCGAAAGGGTCCATAGACCGATCCACGCCAGAATCCGCGGTGCTCTGCATGAGGTCTGGTCTTCTGTCAGGACACAGATGGAGGAGGACAGATCCTTTTGGATGGGCAGACATGGCAGTCAAAAGGCCAGCCAAGTTGCGGGTTATTCTGAATCCTGATGACACCAGGAAGCTAGTTTTGCCTGATGGAATTCCAGAGTCATTGGAGCAGCTTATGGATGAAGTCAGGAAAGTGTGCAGGTTAAATGGCAATTTCAGACTGCAGTACCAAGACAGATCTAAAGCTCCAGAAGATGGATTAACAGCAAAAAAAGTCAAGAGACCTAAGAGAGGAGAGGGCAACCACATACCGGACATTCCAACTGGAGAGACCCCAGAAAATTTGGAAAATGAGAGACTGTCAAGTAAAGAAGCGCAACAATCGTGCAGTGGTAAAGGCCAAAATGGACAAGACTTTTTCACTGCGAAGACAGGACATTGTGGCAAAGGAATCAGCAGTGGAAGAGTTGATAGAGAGATGGCCTGCATTGATTACAATGGATGAGGCAAGTTACTTTTTAAATGAGTGACAATGGTCAGTGAAGATCTGTAAAGTAAATTATTATTCCCTATCATAAGATACTAAAAAATGAGCCAAAATGCACATTTTGGCCCCTGATGTCAAACCCAAGATCTCACACAAAAAAAAACAGTTGTTTTTCCATTTCCATTTTTTTTTTTTTTTTTTAAGATCAATGCTCAATTTATGAGAACAACTACTGTTCCACTTCAAACCCAATTCCTGGCTTCCTTGGACAAGCACCACAGCAAGCTGGTAGAGATCATCAGAAACAAGGGAGGAGCTATCAGAGAGAAGGCCCAGAATATACTGAATGTTCTTGATCAAGTATGTACATCAAAATGTATTACTTATATATGTAGCCCGGGATGTGAGTTAGTAATAACACTGGACATAGGATGAAGAATATAAACGGGGATCCTTTATTCCAGACTGCACTTAAAATAGTACAGTGTTATTCATGCAATTTTTTGGGAAATTAGAGTACAAAAGTTCAAGCAGGTTAACAGTTGTTGAAATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU113427 lncRNA upstream 346 10966941 ~ 10967210 (+) True G99698
TU113426 lncRNA upstream 1090 10966157 ~ 10966466 (+) True G99697
TU113423 lncRNA upstream 3859 10963460 ~ 10963697 (+) True G99694
TU113420 lncRNA upstream 10107 10957228 ~ 10957449 (+) True G99691
TU113410 lncRNA upstream 20067 10947270 ~ 10947489 (+) True G99681
TU113431 lncRNA downstream 711 10970026 ~ 10970265 (+) True G99702
TU113438 lncRNA downstream 12045 10981360 ~ 10981583 (+) True G99709
TU113440 lncRNA downstream 19050 10988365 ~ 10989880 (+) True G99711
TU113480 lncRNA downstream 83879 11053194 ~ 11056576 (+) True G99738
TU113504 lncRNA downstream 119784 11089099 ~ 11091748 (+) True G99761
CI01000016_10881609_10887779.mRNA mRNA upstream 79659 10881461 ~ 10887897 (+) True CI01000016_10881609_10887779
CI01000016_10865834_10867561.mRNA mRNA upstream 99908 10865349 ~ 10867648 (+) True CI01000016_10865834_10867561
CI01000016_10760640_10783664.mRNA mRNA upstream 183697 10760640 ~ 10783859 (+) True CI01000016_10760640_10783664
CI01000016_10756608_10758149.mRNA mRNA upstream 209355 10754393 ~ 10758201 (+) True CI01000016_10756608_10758149
CI01000016_10748252_10749230.mRNA mRNA upstream 218213 10748252 ~ 10749343 (+) True CI01000016_10748252_10749230
CI01000016_11277549_11278592.mRNA mRNA downstream 307240 11276555 ~ 11278855 (+) True CI01000016_11277549_11278592
CI01000016_11298638_11300240.mRNA mRNA downstream 328355 11297670 ~ 11300506 (+) True CI01000016_11298638_11300240
CI01000016_11311430_11313782.mRNA mRNA downstream 341566 11310881 ~ 11314080 (+) True CI01000016_11311430_11313782
CI01000016_11330944_11334103.mRNA mRNA downstream 360898 11330213 ~ 11334466 (+) False CI01000016_11330944_11334103
CI01000016_11344848_11345696.mRNA mRNA downstream 375137 11344452 ~ 11345869 (+) False CI01000016_11344848_11345696
TU113168 other upstream 668652 10294391 ~ 10298904 (+) True G99456
TU113122 other upstream 730705 10234400 ~ 10236851 (+) True G99410
TU112690 other upstream 1041902 9924418 ~ 9925654 (+) True G99041
TU112665 other upstream 1170616 9795631 ~ 9795684 (+) True G99016
TU111822 other upstream 1964839 8996098 ~ 9002717 (+) True G98288
TU113731 other downstream 702330 11671645 ~ 11672873 (+) True G99940
TU113986 other downstream 1191326 12160641 ~ 12162845 (+) False G100178

Expression Profile