RNA id: TU106730


Basic Information

Item Value
RNA id TU106730
length 4706
lncRNA type read_through
GC content 0.37
exon number 2
gene id G93801
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 62817 ~ 150965 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAACATCAACATTGTTTTGAAAAGTAGTGTTAATAGTCTGGGATGTTTGCTTTGAAAATGTATCATATTTACTACACATTTTTGTTATGGTCTATTTCATATTGTGATTATATGGTTGTCAACCACATTAGATACTCTGTGAGAGACATGTCTTAGGTCTAAACCATTCAAATAATAATTTTGCTGGTGTCACTGTTATTATGCGTTTGAAAAGCATTTCATATGCATTATGCACTGATGTTAGCGACTATATATTTGATTCAGGCTGGTTTGTTTGGAATCAAGTCAACTCTCTAATGTGATGCAAACAGTTTCCATCATCTCAAGTAACATGAAAAACTTGGCTTTGTTTGTCTCAGACACACTTGGCTAGAGCCAGTGTCTTTTAATGCATAGTGTGGTGGTGAGGAGGGAGAGCTTAATGATATTATTTTTGAGTGTATCAGCACAAAGCGGAGAACTCTGTGAATGAGACGTGTTATTGCTTGAACTAAGCGGCAACAGTGCTTGAGCAGAATGTGAAGGGAGGAATGGTGTGGGCCTTTTTCCTTTTTTTTAATTTACCACAATGTTACAATTGTTTGAGTATATCATAAGCAATACCTTTTGTAAAGAGAGACTGTTTGTTTTTCTGATACACAGGAAAAAATGTTTGCTTTTAGCCCACTAATTTGGAGTTACACTGCAGCCTGCATTTAAGAATCTTTTTACAAAGAAAAATCAACTTCAGTCTTTCTTAAATGGACTAGATAGACTAAATTACTCATTGTCTCTGTATGGCACTTTATGCAGTGCATTATGTTAGACCATTTTTCAGTTTCATTTTCATTCTGAATACTTGTTTGCAATTTGGAAGTGACTTTTTGGCAACAGTGACAATGTGTTGCTAGCTGATGTGATGTGAAAATGTATAACATTTAGAGTTCACCCAAAAATTGACAGTTTATTTACTCTCCTATGTCATTCCTGACTTATATGCTGTTATTTTTCCCCCTGTGGACTAGAAAAGAATTTATGTAAGTCTTTATATGATTGTTTTCCATTAAAAAAAAAAAAAAAAAAAAAACGCATAATGACCAAGATTGTGAACAAGTCAGTTACAAATCATATACTAGTAGGTTCATATTTTGAATAAGTAATTACTTCATTACCATTAAAAAAGTATGTTGTATGTCGTATGAATGTAATACGGATGTACAACATTTGACCTACCAGCGTCAGTTGTGTCGCCTCACTACCATTCACAAATCCTCCCCAGTCGTGGCTTCATGGTATAGTAAATTGTCCATTGGATGCGCATTTCATAATCTCGATGGAAGTAGTAGGTCATCCAAGTACTTTTTGCCTTCTGTGAAGTCAGACATGCAATTCTTTTCACATACTGTTTTTTTTTCCCTAGGGAAGTATGCATATTTTGATGCTCTGTGGCAACCAGTCTGATTCATGAATGAATCTTTCAGTCTGATTTGCGAACCTTATTAACTGATTTGTTGAAAAGAACTGATTCAAAATTGACTCCCCACATTTCAATATGCCTACTTCCCCTCTATATAGTATGCATGCTTTTTGCATTCTATATAGTATGCAAAAAATAGTATGTCAAGTGAGCAGTATGTTTGAATACACAGTATTCATAAAACGGCAAAAAATACCTGGATAATGTTCCACTTCCACAATAAAAATGACATAAACATGAGTGAATAATGAAAGAATATTCATTTTTTGGGTGAACTATCCCTCATAATTCTCATAGATGGCCTTATTATGTTGAATTTAACTTTATTTCTAAAGAAACAGAAGTCTAATTGTGTATCTTCCTTGTAATGGTTTCATTAGAAAAGAGCATGGCAAGGTCAAAAAAACATTTGTAACTTTCGTCGTCAAACTCTCTTCAAATCCACAGAGGTTGCCAAGGTTAACGGCCGTGTGTCGCCAGTAAGTGTGCGAGAATCTTTAATGACCATTGCTTACCTCGTTAGCCAGGACACCGCAGCACCTGTGGTGCGCTATAACCGTCAGACTAATGAGCTGTTGGCTGAATTTCATCTTGAAGTTTTCTGTGGCTTAACTGCTCCATTTACATTTCTTTCACATGCAAAATGGAGGACATGAAAGATTTGTCTCCGTAAAACAATGGCATTCTGAGGCATTGAAATTCACACTGTGAAGAAAAATAATAACATTCTCTGCTGATGTTAATGTGCTTTGTTTCATGCCAGCATGCCACACAGGCCCCATCAGCGGCGGATGGCATGAAGTGTAGATCTGAAGGATCACAGTGCGTGCCCAGTGCCTTGTCCTTATCAGACCTCACTGCATCTCTTTTCTCCTTTTCACCTCATCCTTGAACATATTCACAAACACATACAGACCGTTTTGGACATCAAGTTCGCTGCTTGCTACTCCCCTGCACACATTGTTTTAGCAAGTATTTTTTTTTAAACTTAAAAGTTGTAACTCTACCTAAGGGGTGCTGCAGTAGATACTTGGCATATTTAAAATGTTATTTGAATGCGGAGTTAAATTCCTCGAAAGAACTAGCCAACAAAATCTATTCTGATTTTGACTCTATTTAAGTATTAGCAGGTTCATCATTCACAAAGTTCTTTCAGTTCTTTTGTTATACATTCTGGCTCATTTTGTAATGCTTTAAAGGGATTGTTCCAAAAATGAAAATTGTCACCCTTATGTTCTTCCAAACCCATAAGACTTTTTCATCTTTGGAACACAAATGAAAATATTTTTAATAAAATCAGAGAGATTTCTGTCCCTCCTTTGAAAGTCTTTATATATATATATAACATTTATATAGAGATCATAAACGCAATCCATATGAATTAAGTTGTTTAATACAAGTCTTCTGAAGAGACACGATCGCTTAATATGATAAACAGATTTAATTTAAGCTTTTATTCACATATAAACATTGATCAGTGAACAGTGAAATGGAAGTTCAACTGTACTGGCTTGACGCATGAGAACAAACCTCATTGGTTCTCGCGGAAGCTCAAACGTGCTGTATCTCTTTATGAACCTTTTGAAGCATCAGATTTTTGGGTGAATAGACTTTCAATAGAGGGACAGAAATCTCTCAGATTTCATTAAAAATATCTTTATTTGTGTTTTAAAGATAAACGAAAGTCTTATGGGTTTGGAACAACATGAGTGTGAGTAAATGACAGAATTTTACATTTTGGGGAAACTCTTTAAGCCAGAAGTTTTCAAACTTTTTGATACTCTCATGACAACTCTCTGAGTGTTTGGCATGGTAAGGGATATGACAATGTTGATATGTTTGGTCTAGATCTAGATTTGGTCAGATCGGAATAGATCTGCTACGCTGCTGCTGTGAGCAAGTAAGACATGCTGCTGCTGTACAATATAACATACATGAATTACCCATAGCAGATCTATGCAGATCGAGCTGGGGAAGGTGGAACTGCTACAGTAAATGCTGACCAAGTATTTGAAGGTTGAGCAGCGAGCTCACTGGCTACTGATAGAGCAGGAGCCAATCAGCTGTGCCCTATAGAGAATGATGATTGCAAGCAGATTGAGTTAAGGACCTATCAGCCTGCGCCATCTAGAGATTCATGACAGAACATTGTATGTAGATTATTTTATTTGTTTAAAAATACATTTTGTAAAATGACTTTATTTCTCTCAATTTTTTGAGAGATGTTAGGATTGTATTGATAAAGAGATTCATTTAGGTGTTTCTTCAGGATGTAATGTTTTAAATTTTATAGAAGTGTATTAATATTAAAAAGTGGGAGTTTATGATGGAATTTGGATAAACTGAAACAATACAGTTCCACAGTAGCCCGCCAAATATGGACTCTGTTTGGTTAATATACAGACTGCTGGGTGGTTTGTAACAGTTTATATTTTGTTTAGAAATGTGCCAAATATCTGAAATCAAGGAAAGTGTACTTTAGGGACACCATATCAGCATCGCAGTAGGAAAACAGAATCATCATCCTGTCAGGTATGTTATTGCAGAAAGATAAGAACTTAGCCGTTATCTTAAACAACCCAAACTGATTAAATGCCCAGTCATCACGCTACACCGCTCCCTACTGAGGGTCCTCCAGCGGCACAGGCAGCCTGCGAATAGAGGCGAAATGAATGAGAAGGTCTGGAAAGGGTATCAGCTGCTATAATTCCACAGTGAATGAGCCTGATGTCACTCGTCGCCCATCAGTCAGGGACTCACTTGGAGTTTGCCATGCCACGGGGAAAAATGACATCAGAACGCTCACTCCCTGCTCTTTGATTTACTGCTTGATGAGTAGCAAATCTCTGGGAGATGTACTGATCACCAGACTCTCATTTTTATCCCCCACCTTTCAGACCCACCTGTGCTGAGCATTTTGCTCTTGTTTTCAGGGGCTGAAAATGACAACTTTCTGTCTTTCGCTTTCAGAAGATTGTGATGCCTCTGGTGTAGTAATGTAATAGCAAGAGAACAGGAGGTGATTGTCACTATCATCTCTAGTCTGGCACCTCCCTTATGTTGGCATCCTTTTTATGAAAGCATTCCTGCTGTTGTTACTGGAGAAGCACATACAGTTGGGCCCAAAAGTCTGAGTACAAAATGAAAATGATTTTNNNNNNNNNTTTATCAGTTAGATATTTTACTGGGGTTCGTGTCCCAGTAAAAAGGGTCTAGCGACGCCCCTGTGCTAAATAGTTTGATGTAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106734 lncRNA downstream 3222 59358 ~ 59595 (-) True G93805
TU106764 lncRNA upstream 37639 188604 ~ 189338 (-) True G93829
TU106770 lncRNA upstream 48193 199158 ~ 202946 (-) True G93835
TU106815 lncRNA upstream 130029 280994 ~ 281211 (-) True G93873
TU106892 lncRNA upstream 249528 400493 ~ 401772 (-) True G93934
TU106917 lncRNA upstream 358106 509071 ~ 509303 (-) True G93954
CI01000016_00012244_00028573.mRNA mRNA downstream 34244 11615 ~ 28573 (-) True CI01000016_00012244_00028573
CI01000016_00002941_00010117.mRNA mRNA downstream 52700 2493 ~ 10117 (-) True CI01000016_00002941_00010117
CI01000016_00153934_00154312.mRNA mRNA upstream 2943 153908 ~ 155622 (-) True CI01000016_00153934_00154312
CI01000016_00166492_00172759.mRNA mRNA upstream 15120 166085 ~ 172759 (-) True CI01000016_00166492_00172759
CI01000016_00251025_00251471.mRNA mRNA upstream 99253 250218 ~ 251486 (-) True CI01000016_00251025_00251471
CI01000016_00448107_00452861.mRNA mRNA upstream 296893 447858 ~ 452861 (-) True CI01000016_00448107_00452861
CI01000016_00456765_00460615.mRNA mRNA upstream 303863 454828 ~ 461209 (-) True CI01000016_00456765_00460615
TU107853 other upstream 2119871 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 2834295 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 3484642 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 3714796 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 4761743 4912708 ~ 4923404 (-) True G97040

Expression Profile