RNA id: TU106892



Basic Information


Item Value
RNA id TU106892
length 322
lncRNA type antisense_over
GC content 0.56
exon number 3
gene id G93934
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 400493 ~ 401772 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CGCATTGGTGCCCTGGTCGTCATCATGAGCCGCCGCCCTCAGGAAGCTAGTCCCAACTGGCGTGTCCTCTCGCAGGAAGTATTGGTAGCGGCTGTTCTCAAACTTGGGGTCATTGTCGTTCTGGTCAGCGATGAGGACAGTGATCTGACAGATGCCGATGAGGGGCTCCTGTGCTTGGTCAGTAGCCGTGACTGACAGCGTATACTCTCGCTGCCTCTCTCGGTCAAAACTTACCGCCGTACTGATCACACCTGTGTCAGGATTTATAGTGAATCCTGGTGAGGCTCCGTCCCTCTGCATTATCCCATACTTGACCTCCCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU106815 lncRNA downstream 119282 280994 ~ 281211 (-) True G93873
TU106770 lncRNA downstream 197547 199158 ~ 202946 (-) True G93835
TU106764 lncRNA downstream 211155 188604 ~ 189338 (-) True G93829
TU106730 lncRNA downstream 249528 62817 ~ 150965 (-) True G93801
TU106731 lncRNA downstream 261619 132552 ~ 138874 (-) True G93802
TU106917 lncRNA upstream 107299 509071 ~ 509303 (-) True G93954
TU106952 lncRNA upstream 172528 574300 ~ 576181 (-) True G93988
TU106956 lncRNA upstream 177445 579217 ~ 579783 (-) True G93992
TU106976 lncRNA upstream 234395 636167 ~ 636370 (-) True G94011
TU106982 lncRNA upstream 242901 644673 ~ 644880 (-) True G94017
CI01000016_00251025_00251471.mRNA mRNA downstream 149007 250218 ~ 251486 (-) True CI01000016_00251025_00251471
CI01000016_00166492_00172759.mRNA mRNA downstream 227734 166085 ~ 172759 (-) True CI01000016_00166492_00172759
CI01000016_00153934_00154312.mRNA mRNA downstream 244871 153908 ~ 155622 (-) True CI01000016_00153934_00154312
CI01000016_00099623_00100245.mRNA mRNA downstream 300248 98834 ~ 100245 (-) True CI01000016_00099623_00100245
CI01000016_00079894_00094596.mRNA mRNA downstream 305897 78944 ~ 94596 (-) True CI01000016_00079894_00094596
CI01000016_00448107_00452861.mRNA mRNA upstream 46086 447858 ~ 452861 (-) True CI01000016_00448107_00452861
CI01000016_00456765_00460615.mRNA mRNA upstream 53056 454828 ~ 461209 (-) True CI01000016_00456765_00460615
CI01000016_00471859_00490955.mRNA mRNA upstream 69011 470783 ~ 490955 (-) True CI01000016_00471859_00490955
CI01000016_00513504_00514565.mRNA mRNA upstream 110352 512124 ~ 514744 (-) True CI01000016_00513504_00514565
CI01000016_00581946_00586945.mRNA mRNA upstream 180094 581866 ~ 586997 (-) True CI01000016_00581946_00586945
TU107853 other upstream 1869064 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 2583488 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 3233835 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 3463989 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 4510936 4912708 ~ 4923404 (-) True G97040

Expression Profile