RNA id: TU106917


Basic Information

Item Value
RNA id TU106917
length 233
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G93954
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 509071 ~ 509303 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTATCTATACCACTGCTGCACAAATCCTTTGTCTACGGTGCTATAATTCTATAGTATTCAGATTGCCAATAAGAACTTAGATGCTGATTATAATTTGTTCTTTTCATGATGGAAGACACAATCATAATTGCTTCTAACTCTGCTGAAGCTCAACAATAAAGTAAATCAGAGGACAAAGAAATGTGTTTCTGCTCATCCAAAAAATTTGGCGTTTACTCTTGAGCAATATTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106892 lncRNA downstream 107299 400493 ~ 401772 (-) True G93934
TU106815 lncRNA downstream 227860 280994 ~ 281211 (-) True G93873
TU106770 lncRNA downstream 306125 199158 ~ 202946 (-) True G93835
TU106764 lncRNA downstream 319733 188604 ~ 189338 (-) True G93829
TU106730 lncRNA downstream 358106 62817 ~ 150965 (-) True G93801
TU106952 lncRNA upstream 64997 574300 ~ 576181 (-) True G93988
TU106956 lncRNA upstream 69914 579217 ~ 579783 (-) True G93992
TU106976 lncRNA upstream 126864 636167 ~ 636370 (-) True G94011
TU106982 lncRNA upstream 135370 644673 ~ 644880 (-) True G94017
TU106968 lncRNA upstream 198747 708050 ~ 723238 (-) False G94004
CI01000016_00471859_00490955.mRNA mRNA downstream 18116 470783 ~ 490955 (-) True CI01000016_00471859_00490955
CI01000016_00456765_00460615.mRNA mRNA downstream 47862 454828 ~ 461209 (-) True CI01000016_00456765_00460615
CI01000016_00448107_00452861.mRNA mRNA downstream 56210 447858 ~ 452861 (-) True CI01000016_00448107_00452861
CI01000016_00251025_00251471.mRNA mRNA downstream 257585 250218 ~ 251486 (-) True CI01000016_00251025_00251471
CI01000016_00166492_00172759.mRNA mRNA downstream 336312 166085 ~ 172759 (-) True CI01000016_00166492_00172759
CI01000016_00513504_00514565.mRNA mRNA upstream 2821 512124 ~ 514744 (-) True CI01000016_00513504_00514565
CI01000016_00581946_00586945.mRNA mRNA upstream 72563 581866 ~ 586997 (-) True CI01000016_00581946_00586945
CI01000016_00589778_00591095.mRNA mRNA upstream 80369 589672 ~ 591294 (-) True CI01000016_00589778_00591095
CI01000016_00592794_00596916.mRNA mRNA upstream 82827 592130 ~ 597102 (-) True CI01000016_00592794_00596916
CI01000016_00601605_00607255.mRNA mRNA upstream 91319 600622 ~ 607255 (-) True CI01000016_00601605_00607255
TU107853 other upstream 1761533 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 2475957 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 3126304 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 3356458 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 4403405 4912708 ~ 4923404 (-) True G97040

Expression Profile