RNA id: TU106956


Basic Information

Item Value
RNA id TU106956
length 253
lncRNA type antisense_over
GC content 0.45
exon number 4
gene id G93992
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 579217 ~ 579783 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGATGTCTGTAGTGACTTCTCAAGAAGCGATGGGCTTTCCTCGTCTTCACAGTGGAGAATGTTGTCCATGTCAATCTCTGTGTTTTGATAGCACTCGTCAGAAGATGTACTGCTTGAATCATTCACATCTACCGCTTGACTGTCACCATAGGACAGTGGTGCAAACTGTGAATTTTCATGCAATGATGGCGCTTCCTCACGTGACTTGAAGTTGTTGTCTATGTCGGTCTCTGTGTTTTGATAGAACTCTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106952 lncRNA downstream 3036 574300 ~ 576181 (-) True G93988
TU106917 lncRNA downstream 69914 509071 ~ 509303 (-) True G93954
TU106892 lncRNA downstream 177445 400493 ~ 401772 (-) True G93934
TU106815 lncRNA downstream 298006 280994 ~ 281211 (-) True G93873
TU106770 lncRNA downstream 376271 199158 ~ 202946 (-) True G93835
TU106976 lncRNA upstream 56384 636167 ~ 636370 (-) True G94011
TU106982 lncRNA upstream 64890 644673 ~ 644880 (-) True G94017
TU106968 lncRNA upstream 128267 708050 ~ 723238 (-) False G94004
TU106969 lncRNA upstream 129184 708967 ~ 723299 (-) True G94004
TU107039 lncRNA upstream 165889 745672 ~ 745975 (-) True G94073
CI01000016_00513504_00514565.mRNA mRNA downstream 64473 512124 ~ 514744 (-) True CI01000016_00513504_00514565
CI01000016_00471859_00490955.mRNA mRNA downstream 88262 470783 ~ 490955 (-) True CI01000016_00471859_00490955
CI01000016_00456765_00460615.mRNA mRNA downstream 118008 454828 ~ 461209 (-) True CI01000016_00456765_00460615
CI01000016_00448107_00452861.mRNA mRNA downstream 126356 447858 ~ 452861 (-) True CI01000016_00448107_00452861
CI01000016_00251025_00251471.mRNA mRNA downstream 327731 250218 ~ 251486 (-) True CI01000016_00251025_00251471
CI01000016_00581946_00586945.mRNA mRNA upstream 2083 581866 ~ 586997 (-) True CI01000016_00581946_00586945
CI01000016_00589778_00591095.mRNA mRNA upstream 9889 589672 ~ 591294 (-) True CI01000016_00589778_00591095
CI01000016_00592794_00596916.mRNA mRNA upstream 12347 592130 ~ 597102 (-) True CI01000016_00592794_00596916
CI01000016_00601605_00607255.mRNA mRNA upstream 20839 600622 ~ 607255 (-) True CI01000016_00601605_00607255
CI01000016_00679328_00729780.mRNA mRNA upstream 99009 678792 ~ 729966 (-) False CI01000016_00679328_00729780
TU107853 other upstream 1691053 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 2405477 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 3055824 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 3285978 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 4332925 4912708 ~ 4923404 (-) True G97040

Expression Profile