RNA id: TU106382


Basic Information

Item Value
RNA id TU106382
length 288
lncRNA type intronic
GC content 0.43
exon number 1
gene id G93497
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1261920 ~ 1262207 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATTTGGTCTGTATTTATCCGTGAGCTGTTCGTTTCCCTTAATCACCTTGGCAACATTACCATGGTTTAGAAAACCAAACAATCCCGTTTCCAGGTAGATCCACCAGCATTAGTGGATGGAAAGCTCTCGGCTCTCTAAAGAGCTTGTGAATTAGAAACCATACCTTTGTGTGCAGTGACCACATCATTAAAAGTAGATGCCGAACATGCCCTTACATATTTGTGAGGGTGCAAGCATGTGTTCATCTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106332 lncRNA upstream 26074 1228198 ~ 1235846 (+) True G93449
TU106360 lncRNA upstream 49299 1212344 ~ 1212621 (+) True G93476
TU106322 lncRNA upstream 63547 1195710 ~ 1198373 (+) True G93442
TU106312 lncRNA upstream 177153 1084467 ~ 1084767 (+) True G93434
TU106288 lncRNA upstream 181985 1078828 ~ 1079935 (+) True G93413
TU106367 lncRNA downstream 78245 1340452 ~ 1342798 (+) False G93483
TU106368 lncRNA downstream 78245 1340452 ~ 1341657 (+) True G93483
TU106433 lncRNA downstream 132491 1394698 ~ 1449594 (+) True G93547
TU106486 lncRNA downstream 159413 1421620 ~ 1449437 (+) True G93598
TU106455 lncRNA downstream 199393 1461600 ~ 1461978 (+) True G93567
CI01000016_01238151_01242924.mRNA mRNA upstream 18960 1237991 ~ 1242960 (+) True CI01000016_01238151_01242924
CI01000016_01217119_01220858.mRNA mRNA upstream 39983 1217119 ~ 1221937 (+) True CI01000016_01217119_01220858
CI01000016_01183747_01191853.mRNA mRNA upstream 69062 1183747 ~ 1192858 (+) True CI01000016_01183747_01191853
CI01000016_01122656_01129008.mRNA mRNA upstream 132912 1122656 ~ 1129008 (+) True CI01000016_01122656_01129008
CI01000016_01052539_01073915.mRNA mRNA upstream 186387 1052539 ~ 1075533 (+) True CI01000016_01052539_01073915
CI01000016_01277792_01304615.mRNA mRNA downstream 14721 1276928 ~ 1304762 (+) True CI01000016_01277792_01304615
CI01000016_01408124_01408966.mRNA mRNA downstream 144429 1406636 ~ 1409165 (+) True CI01000016_01408124_01408966
CI01000016_01476236_01476607.mRNA mRNA downstream 214029 1476236 ~ 1476762 (+) True CI01000016_01476236_01476607
CI01000016_01509959_01560806.mRNA mRNA downstream 247752 1509959 ~ 1561122 (+) True CI01000016_01509959_01560806
CI01000016_01563821_01567070.mRNA mRNA downstream 300191 1562398 ~ 1567529 (+) True CI01000016_01563821_01567070
TU106281 other upstream 334388 905400 ~ 927532 (+) True G93406
TU108565 other downstream 2599968 3862175 ~ 3862305 (+) True G95439
TU108786 other downstream 3010429 4272636 ~ 4273905 (+) True G95648
TU108629 other downstream 3572351 4834558 ~ 4836655 (+) True G95503
TU108946 other downstream 3957673 5219880 ~ 5225941 (+) True G95792
TU109033 other downstream 4143662 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797

Expression Profile