RNA id: TU106455


Basic Information

Item Value
RNA id TU106455
length 379
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G93567
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1461600 ~ 1461978 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACGACTAGCCAATGCATTTCTAGAAACAGGGCAAGACAGAAGAAATGATCCTTGGATATCAATGCAAGAAACAGATAATTGACCAGTGAAGACCTACCAAAACATTCAGATGGTTAGTCAAAAATGCAGTCCTTTATTTTGTTAAGAAAGAAACAGATTCTTAGCTGATCTTCCAGCTTGGCGATGAAAAACGACCAGCCAAAACATTCCTGGAAAACAAGGCGAGAAGAAGAAATGATCTTTGGATATCAATGCACGAAAGGGATAATTGATCAATGAAGACCGACCAAAATATTCCTATGGTTAGTCAAAAAAAAAAAAAAAAAATGCAGTCCTTTATTTTGCTAAGAAAGGAACAGATTCTTAGCTGATCTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106433 lncRNA upstream 12006 1394698 ~ 1449594 (+) True G93547
TU106486 lncRNA upstream 12163 1421620 ~ 1449437 (+) True G93598
TU106367 lncRNA upstream 118802 1340452 ~ 1342798 (+) False G93483
TU106368 lncRNA upstream 119943 1340452 ~ 1341657 (+) True G93483
TU106382 lncRNA upstream 199393 1261920 ~ 1262207 (+) True G93497
TU106453 lncRNA downstream 139 1462117 ~ 1469355 (+) True G93565
TU106512 lncRNA downstream 34415 1496393 ~ 1554026 (+) True G93624
TU106614 lncRNA downstream 451819 1913797 ~ 1942317 (+) True G93711
TU106696 lncRNA downstream 506560 1968538 ~ 1978432 (+) True G93780
TU106693 lncRNA downstream 577611 2039589 ~ 2045283 (+) True G93777
CI01000016_01408124_01408966.mRNA mRNA upstream 52435 1406636 ~ 1409165 (+) True CI01000016_01408124_01408966
CI01000016_01277792_01304615.mRNA mRNA upstream 156838 1276928 ~ 1304762 (+) True CI01000016_01277792_01304615
CI01000016_01253760_01273553.mRNA mRNA upstream 187647 1253406 ~ 1273953 (+) True CI01000016_01253760_01273553
CI01000016_01238151_01242924.mRNA mRNA upstream 218640 1237991 ~ 1242960 (+) True CI01000016_01238151_01242924
CI01000016_01217119_01220858.mRNA mRNA upstream 239663 1217119 ~ 1221937 (+) True CI01000016_01217119_01220858
CI01000016_01476236_01476607.mRNA mRNA downstream 14258 1476236 ~ 1476762 (+) True CI01000016_01476236_01476607
CI01000016_01509959_01560806.mRNA mRNA downstream 47981 1509959 ~ 1561122 (+) True CI01000016_01509959_01560806
CI01000016_01563821_01567070.mRNA mRNA downstream 100420 1562398 ~ 1567529 (+) True CI01000016_01563821_01567070
CI01000016_01588035_01601276.mRNA mRNA downstream 125092 1587070 ~ 1601909 (+) True CI01000016_01588035_01601276
CI01000016_01656995_01657299.mRNA mRNA downstream 195017 1656995 ~ 1658390 (+) True CI01000016_01656995_01657299
TU106281 other upstream 534068 905400 ~ 927532 (+) True G93406
TU108565 other downstream 2400197 3862175 ~ 3862305 (+) True G95439
TU108786 other downstream 2810658 4272636 ~ 4273905 (+) True G95648
TU108629 other downstream 3372580 4834558 ~ 4836655 (+) True G95503
TU108946 other downstream 3757902 5219880 ~ 5225941 (+) True G95792
TU109033 other downstream 3943891 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797

Expression Profile