RNA id: TU106614


Basic Information

Item Value
RNA id TU106614
length 339
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G93711
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 1913797 ~ 1942317 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGGGACCAAAATCTTTCTCTCTGTCATATGATTTATAATATTATTTTTTTTTTCCAACAATGCCTGGTGATAAATAGAGAGAACCCCTGGCTGTGGGCATGAAAAAAATGTGTCTTTACCTACTGGCTGGTATCCCTGCCTTGTGGGCCCACCAAATGGATTTCTGCTTCCAAAAGAGCCTGCGTCAATGGATCCGTACGACATTCTGGGTCCTCCGATAATTTCTTGAGCAGCCAAATTGGAGTAATCCTTTTTTTTTCTTGAGAGAGCACTTAGCCTTAGCACTCACACCAGATGCAGGAGAACCTCTCAGATTCAAGCCCGGCTAACAACATCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106512 lncRNA upstream 359771 1496393 ~ 1554026 (+) True G93624
TU106453 lncRNA upstream 444442 1462117 ~ 1469355 (+) True G93565
TU106455 lncRNA upstream 451819 1461600 ~ 1461978 (+) True G93567
TU106433 lncRNA upstream 464203 1394698 ~ 1449594 (+) True G93547
TU106486 lncRNA upstream 464360 1421620 ~ 1449437 (+) True G93598
TU106696 lncRNA downstream 26221 1968538 ~ 1978432 (+) True G93780
TU106693 lncRNA downstream 97272 2039589 ~ 2045283 (+) True G93777
TU106710 lncRNA downstream 151635 2093952 ~ 2094182 (+) True G93794
TU106695 lncRNA downstream 162589 2104906 ~ 2105133 (+) True G93779
TU107724 lncRNA downstream 256691 2199008 ~ 2271134 (+) True G94696
CI01000016_01656995_01657299.mRNA mRNA upstream 255407 1656995 ~ 1658390 (+) True CI01000016_01656995_01657299
CI01000016_01588035_01601276.mRNA mRNA upstream 311888 1587070 ~ 1601909 (+) True CI01000016_01588035_01601276
CI01000016_01563821_01567070.mRNA mRNA upstream 346268 1562398 ~ 1567529 (+) True CI01000016_01563821_01567070
CI01000016_01509959_01560806.mRNA mRNA upstream 352675 1509959 ~ 1561122 (+) True CI01000016_01509959_01560806
CI01000016_01476236_01476607.mRNA mRNA upstream 437035 1476236 ~ 1476762 (+) True CI01000016_01476236_01476607
CI01000016_01989129_01990437.mRNA mRNA downstream 46707 1989024 ~ 1990995 (+) True CI01000016_01989129_01990437
CI01000016_02000795_02079453.mRNA mRNA downstream 57892 2000209 ~ 2080896 (+) True CI01000016_02000795_02079453
CI01000016_02220464_02221013.mRNA mRNA downstream 278147 2220464 ~ 2221030 (+) False CI01000016_02220464_02221013
CI01000016_02235073_02261683.mRNA mRNA downstream 292756 2235073 ~ 2262308 (+) True CI01000016_02235073_02261683
CI01000016_02337039_02343109.mRNA mRNA downstream 394722 2337039 ~ 2343109 (+) True CI01000016_02337039_02343109
TU106281 other upstream 986265 905400 ~ 927532 (+) True G93406
TU108565 other downstream 1919858 3862175 ~ 3862305 (+) True G95439
TU108786 other downstream 2330319 4272636 ~ 4273905 (+) True G95648
TU108629 other downstream 2892241 4834558 ~ 4836655 (+) True G95503
TU108946 other downstream 3277563 5219880 ~ 5225941 (+) True G95792
TU109033 other downstream 3463552 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797

Expression Profile