Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00003182 |
| length | 1369 |
| lncRNA type | antisense_over |
| GC content | 0.42 |
| exon number | 3 |
| gene id | XLOC_000721 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 54698173 ~ 54700755 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0008152 | metabolic process | biological_process |
| GO:0042737 | drug catabolic process | biological_process |
| GO:1901564 | organonitrogen compound metabolic process | biological_process |
| GO:0009063 | cellular amino acid catabolic process | biological_process |
| GO:0009072 | aromatic amino acid family metabolic process | biological_process |
| GO:0009074 | aromatic amino acid family catabolic process | biological_process |
| GO:1901606 | alpha-amino acid catabolic process | biological_process |
| GO:0046395 | carboxylic acid catabolic process | biological_process |
| GO:0044282 | small molecule catabolic process | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:1902221 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process | biological_process |
| GO:1902222 | erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process | biological_process |
| GO:0006558 | L-phenylalanine metabolic process | biological_process |
| GO:0006559 | L-phenylalanine catabolic process | biological_process |
| GO:0006570 | tyrosine metabolic process | biological_process |
| GO:0006572 | tyrosine catabolic process | biological_process |
| GO:0016054 | organic acid catabolic process | biological_process |
| GO:0044421 | obsolete extracellular region part | cellular_component |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005615 | extracellular space | cellular_component |
| GO:0016701 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen | molecular_function |
| GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | molecular_function |
| GO:0004175 | endopeptidase activity | molecular_function |
| GO:0004180 | carboxypeptidase activity | molecular_function |
| GO:0004497 | monooxygenase activity | molecular_function |
| GO:0004252 | serine-type endopeptidase activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| GO:0008235 | metalloexopeptidase activity | molecular_function |
| GO:0008236 | serine-type peptidase activity | molecular_function |
| GO:0008237 | metallopeptidase activity | molecular_function |
| GO:0008238 | exopeptidase activity | molecular_function |
| GO:0140096 | catalytic activity, acting on a protein | molecular_function |
| GO:0017171 | serine hydrolase activity | molecular_function |
| GO:0003824 | catalytic activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003179 | lncRNA | upstream | 84709 | 54611838 ~ 54613479 (+) | True | XLOC_000715 |
| TCONS_00003177 | lncRNA | upstream | 228899 | 54277243 ~ 54469289 (+) | True | XLOC_000712 |
| TCONS_00003178 | lncRNA | upstream | 294041 | 54401933 ~ 54404147 (+) | True | XLOC_000713 |
| TCONS_00003176 | lncRNA | upstream | 709412 | 53982614 ~ 53988776 (+) | True | XLOC_000703 |
| TCONS_00001173 | lncRNA | upstream | 749680 | 53946000 ~ 53948508 (+) | True | XLOC_000701 |
| TCONS_00001210 | lncRNA | downstream | 204995 | 54905750 ~ 54906707 (+) | True | XLOC_000726 |
| TCONS_00003183 | lncRNA | downstream | 258737 | 54959492 ~ 54985297 (+) | False | XLOC_000729 |
| TCONS_00003184 | lncRNA | downstream | 273440 | 54974195 ~ 54978775 (+) | True | XLOC_000729 |
| TCONS_00001217 | lncRNA | downstream | 380062 | 55080817 ~ 55084863 (+) | False | XLOC_000731 |
| TCONS_00001218 | lncRNA | downstream | 384890 | 55085645 ~ 55088052 (+) | True | XLOC_000731 |
| TCONS_00001198 | mRNA | upstream | 4176 | 54683655 ~ 54694012 (+) | False | XLOC_000720 |
| TCONS_00001199 | mRNA | upstream | 8798 | 54687616 ~ 54689390 (+) | True | XLOC_000720 |
| TCONS_00001196 | mRNA | upstream | 18085 | 54673846 ~ 54680103 (+) | False | XLOC_000719 |
| TCONS_00001197 | mRNA | upstream | 18085 | 54677173 ~ 54680103 (+) | True | XLOC_000719 |
| TCONS_00001194 | mRNA | upstream | 38265 | 54650048 ~ 54659923 (+) | False | XLOC_000718 |
| TCONS_00001200 | mRNA | downstream | 36598 | 54737353 ~ 54755556 (+) | False | XLOC_000722 |
| TCONS_00001201 | mRNA | downstream | 36651 | 54737406 ~ 54755215 (+) | True | XLOC_000722 |
| TCONS_00001202 | mRNA | downstream | 66188 | 54766943 ~ 54785183 (+) | False | XLOC_000723 |
| TCONS_00001203 | mRNA | downstream | 73122 | 54773877 ~ 54785182 (+) | True | XLOC_000723 |
| TCONS_00001204 | mRNA | downstream | 133364 | 54834119 ~ 54861588 (+) | False | XLOC_000724 |
| TCONS_00001186 | other | upstream | 512032 | 54186039 ~ 54186156 (+) | True | XLOC_000710 |
| TCONS_00001180 | other | upstream | 636978 | 54053104 ~ 54061210 (+) | True | XLOC_000705 |
| TCONS_00001166 | other | upstream | 1310307 | 53387765 ~ 53387881 (+) | True | XLOC_000690 |
| TCONS_00001160 | other | upstream | 1330154 | 53364510 ~ 53368034 (+) | True | XLOC_000689 |
| TCONS_00001154 | other | upstream | 1636991 | 52999832 ~ 53061197 (+) | False | XLOC_000682 |
| TCONS_00001221 | other | downstream | 427710 | 55128465 ~ 55128579 (+) | True | XLOC_000733 |
| TCONS_00001233 | other | downstream | 592870 | 55293625 ~ 55297251 (+) | False | XLOC_000739 |
| TCONS_00001304 | other | downstream | 2647143 | 57347898 ~ 57355033 (+) | False | XLOC_000813 |
| TCONS_00001335 | other | downstream | 3459396 | 58160151 ~ 58173589 (+) | True | XLOC_000837 |
| TCONS_00001394 | other | downstream | 4430537 | 59131292 ~ 59131406 (+) | True | XLOC_000888 |
