RNA id: TU106695


Basic Information

Item Value
RNA id TU106695
length 228
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G93779
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2104906 ~ 2105133 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGACTGTAGTAAATTAATGTAAAAACCGACACTTCAAATCAACATTTCAAACAAAAAAAAAAAATCTAAACCTTGACAAAAAGTAGTCTTTGAGAATGTCTAAGTATAAATCCAAATCCAAAACTTAATAAAAATAAGTGTTTGTGTCCAAAAACCACTAGAGAATTTATAAGCCACTTTATATAGAGCTCTATAGGAATCTAGTGGTTACAATATGGCATTGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU106710 lncRNA upstream 10724 2093952 ~ 2094182 (+) True G93794
TU106693 lncRNA upstream 59623 2039589 ~ 2045283 (+) True G93777
TU106696 lncRNA upstream 126474 1968538 ~ 1978432 (+) True G93780
TU106614 lncRNA upstream 162589 1913797 ~ 1942317 (+) True G93711
TU106512 lncRNA upstream 550880 1496393 ~ 1554026 (+) True G93624
TU107724 lncRNA downstream 93875 2199008 ~ 2271134 (+) True G94696
TU107727 lncRNA downstream 113491 2218624 ~ 2224819 (+) True G94698
TU107762 lncRNA downstream 225393 2330526 ~ 2333592 (+) True G94726
TU107767 lncRNA downstream 252355 2357488 ~ 2358108 (+) True G94729
TU107934 lncRNA downstream 397994 2503127 ~ 2503442 (+) True G94848
CI01000016_02000795_02079453.mRNA mRNA upstream 24010 2000209 ~ 2080896 (+) True CI01000016_02000795_02079453
CI01000016_01989129_01990437.mRNA mRNA upstream 113911 1989024 ~ 1990995 (+) True CI01000016_01989129_01990437
CI01000016_01656995_01657299.mRNA mRNA upstream 446516 1656995 ~ 1658390 (+) True CI01000016_01656995_01657299
CI01000016_01588035_01601276.mRNA mRNA upstream 502997 1587070 ~ 1601909 (+) True CI01000016_01588035_01601276
CI01000016_01563821_01567070.mRNA mRNA upstream 537377 1562398 ~ 1567529 (+) True CI01000016_01563821_01567070
CI01000016_02220464_02221013.mRNA mRNA downstream 115331 2220464 ~ 2221030 (+) False CI01000016_02220464_02221013
CI01000016_02235073_02261683.mRNA mRNA downstream 129940 2235073 ~ 2262308 (+) True CI01000016_02235073_02261683
CI01000016_02337039_02343109.mRNA mRNA downstream 231906 2337039 ~ 2343109 (+) True CI01000016_02337039_02343109
CI01000016_02355737_02362570.mRNA mRNA downstream 250604 2355737 ~ 2363246 (+) True CI01000016_02355737_02362570
CI01000016_02367430_02368661.mRNA mRNA downstream 262297 2367430 ~ 2368687 (+) True CI01000016_02367430_02368661
TU106281 other upstream 1177374 905400 ~ 927532 (+) True G93406
TU108565 other downstream 1757042 3862175 ~ 3862305 (+) True G95439
TU108786 other downstream 2167503 4272636 ~ 4273905 (+) True G95648
TU108629 other downstream 2729425 4834558 ~ 4836655 (+) True G95503
TU108946 other downstream 3114747 5219880 ~ 5225941 (+) True G95792
TU109033 other downstream 3300736 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797

Expression Profile