RNA id: TU107762


Basic Information

Item Value
RNA id TU107762
length 487
lncRNA type antisense_over
GC content 0.47
exon number 3
gene id G94726
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2330526 ~ 2333592 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGAAGTAGCAGCCAGACTTCCTCTCTAAGCCTTCGGTGACAGCGCAGTAGATGGAGGTCTGTGCGCCCTGCCAGGGAGTTTTCATCAGCAGCATACTGGGCAAAGACAGTATAGTCTTCAGCATGGGGTACCATAAGAGAATATGGCGATTCAGCTCTGTTCGAATCACTCCTGGATGCAGACAGTATGAGGAAACTCCTGTACCTTTCGTTCTTCGTGCAAGTTCTTTGGAGAAAAGCACATTGGCCAGCTTACTCTGTTTATAGCTGACCAAAGGACTATAAGGCCTTTTGTCAAAGAAAAGGTCATCAAATTCAATCTTACCACCAACATGTGCAACACTGGACACATTCACTACGCGGCTGGGGGAGGATCTCTTTAGCATTCCTAATAGTAGATTGGTCAGAAGAAAATGTCCCAAGTGATTGACAGCCAGCTGTGTCTCAAAGCCATCCTCTGTGATCCACTTTGGACACATCATCACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU107724 lncRNA upstream 59392 2199008 ~ 2271134 (+) True G94696
TU107727 lncRNA upstream 105707 2218624 ~ 2224819 (+) True G94698
TU106695 lncRNA upstream 225393 2104906 ~ 2105133 (+) True G93779
TU106710 lncRNA upstream 236344 2093952 ~ 2094182 (+) True G93794
TU106693 lncRNA upstream 285243 2039589 ~ 2045283 (+) True G93777
TU107767 lncRNA downstream 23896 2357488 ~ 2358108 (+) True G94729
TU107934 lncRNA downstream 169535 2503127 ~ 2503442 (+) True G94848
TU107936 lncRNA downstream 175051 2508643 ~ 2508891 (+) True G94850
TU107965 lncRNA downstream 211159 2544751 ~ 2545005 (+) True G94874
TU107989 lncRNA downstream 358091 2691683 ~ 2692011 (+) True G94898
CI01000016_02235073_02261683.mRNA mRNA upstream 68218 2235073 ~ 2262308 (+) True CI01000016_02235073_02261683
CI01000016_02220464_02221013.mRNA mRNA upstream 109496 2220464 ~ 2221030 (+) False CI01000016_02220464_02221013
CI01000016_02000795_02079453.mRNA mRNA upstream 249630 2000209 ~ 2080896 (+) True CI01000016_02000795_02079453
CI01000016_01989129_01990437.mRNA mRNA upstream 339531 1989024 ~ 1990995 (+) True CI01000016_01989129_01990437
CI01000016_01656995_01657299.mRNA mRNA upstream 672136 1656995 ~ 1658390 (+) True CI01000016_01656995_01657299
CI01000016_02337039_02343109.mRNA mRNA downstream 3447 2337039 ~ 2343109 (+) True CI01000016_02337039_02343109
CI01000016_02355737_02362570.mRNA mRNA downstream 22145 2355737 ~ 2363246 (+) True CI01000016_02355737_02362570
CI01000016_02367430_02368661.mRNA mRNA downstream 33838 2367430 ~ 2368687 (+) True CI01000016_02367430_02368661
CI01000016_02374077_02383616.mRNA mRNA downstream 40351 2373943 ~ 2384488 (+) True CI01000016_02374077_02383616
CI01000016_02385791_02400026.mRNA mRNA downstream 52199 2385791 ~ 2400452 (+) True CI01000016_02385791_02400026
TU106281 other upstream 1402994 905400 ~ 927532 (+) True G93406
TU108565 other downstream 1528583 3862175 ~ 3862305 (+) True G95439
TU108786 other downstream 1939044 4272636 ~ 4273905 (+) True G95648
TU108629 other downstream 2500966 4834558 ~ 4836655 (+) True G95503
TU108946 other downstream 2886288 5219880 ~ 5225941 (+) True G95792
TU109033 other downstream 3072277 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797

Expression Profile