RNA id: TU108278


Basic Information

Item Value
RNA id TU108278
length 363
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G95166
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 2864769 ~ 2865131 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATTAACTTTAAAGTTATCTATGTAAAATGTTATAGGTTTAAATATTATTTCTTGCTGTAACTGCTATGTATGTATGTCCTCTATGAACTGCATATGTGAATATTATGTAGACTTACTGTTTACATCAAATTCCTGCTTTAATAGTAGACTAATCATTGCAGGTTTCATCAGTCCAGTCTGTGACTTGCAACATAAACGTCTCCATTTAGCTTCAAAGGACGTCTTCAACGACGGTATTCCATAAAAAATGAAGACTATATTTTTTGCATTCCGATTCCAACATCCAGAGGCACAACAAAACATTTTTCTCTTATTCTCTGGACTTTGCACATTTTCCTCCACTTGCTACCACTATTTTTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108273 lncRNA downstream 15866 2848679 ~ 2848903 (-) True G95161
TU108270 lncRNA downstream 25075 2839470 ~ 2839694 (-) True G95158
TU108269 lncRNA downstream 26249 2838255 ~ 2838520 (-) True G95157
TU108266 lncRNA downstream 88903 2775445 ~ 2775866 (-) True G95154
TU108265 lncRNA downstream 89740 2774594 ~ 2775029 (-) True G95153
TU108284 lncRNA upstream 12400 2877531 ~ 2877739 (-) True G95172
TU108293 lncRNA upstream 153663 3018794 ~ 3019070 (-) True G95181
TU108316 lncRNA upstream 178536 3043667 ~ 3043866 (-) True G95199
TU108308 lncRNA upstream 184760 3049891 ~ 3050726 (-) True G95191
TU108320 lncRNA upstream 226234 3091365 ~ 3091751 (-) True G95203
CI01000016_02817855_02829699.mRNA mRNA downstream 34312 2817855 ~ 2830457 (-) True CI01000016_02817855_02829699
CI01000016_02802780_02815803.mRNA mRNA downstream 48966 2802599 ~ 2815803 (-) True CI01000016_02802780_02815803
CI01000016_02679833_02695963.mRNA mRNA downstream 168806 2678538 ~ 2695963 (-) True CI01000016_02679833_02695963
CI01000016_02589744_02622875.mRNA mRNA downstream 241894 2589475 ~ 2622875 (-) True CI01000016_02589744_02622875
CI01000016_02568824_02575674.mRNA mRNA downstream 289095 2568610 ~ 2575674 (-) True CI01000016_02568824_02575674
CI01000016_02884294_02912568.mRNA mRNA upstream 17715 2882846 ~ 2912568 (-) True CI01000016_02884294_02912568
CI01000016_02936606_02957342.mRNA mRNA upstream 70978 2936109 ~ 2957875 (-) True CI01000016_02936606_02957342
CI01000016_02991852_02994428.mRNA mRNA upstream 126089 2991220 ~ 2994428 (-) True CI01000016_02991852_02994428
CI01000016_03060171_03060612.mRNA mRNA upstream 194412 3059543 ~ 3060612 (-) True CI01000016_03060171_03060612
CI01000016_03062846_03063013.mRNA mRNA upstream 197715 3062846 ~ 3063272 (-) True CI01000016_03062846_03063013
TU107853 other downstream 588494 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 120129 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 770476 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 1000630 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 2047577 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 2460388 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265

Expression Profile