RNA id: TU108308


Basic Information

Item Value
RNA id TU108308
length 598
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G95191
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3049891 ~ 3050726 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAACCTGTAGTCCTGTTTCCTCATGCCATGTTTCATATTTATACTCCAAACATCCTCATGACTTCGTTGTGTAACTCACCTTGTACAGTTTTGCCTAAGTAATCCCCTCTCCTCTCCTTGGTTATAACAGACTGATAGATCTTCCCCGTCGTCAGATTGTTATCCTTGGTTAACCGGATGTCCAGAAAACGTTCGTAATTCCCTAAATCCAAGTCAACCTCGCCGCCATCATCTAGCACAAACACCTCACCATGTTCATAGGGAGAGAAAGTGCCTGCATCGATGTTGATGTAGGGGTCGATTTTGATAGCAGTGACATGCAGGCCACATGATTTGAGGATAGTGCCCACACTGCTGGCTATGATCCCTTTACCAATGCCAGATATCACACCACCGGTCACCAGTATATACTTCATTATTCAACACTGTCTGTCAGTGTACGAAAGACAGTGATGTTTATTTCAACAATGATTTAATACAATGTAACAATGAGCCACAAACAGAATAGAAAATCTAAGTGCATCAATAACTTCACAATAATTGTTTTTTTTTTCTGGAACTAAGTTAATCAAAAACACATAAAAATGCAGTTCATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108316 lncRNA downstream 6025 3043667 ~ 3043866 (-) True G95199
TU108293 lncRNA downstream 30821 3018794 ~ 3019070 (-) True G95181
TU108284 lncRNA downstream 172152 2877531 ~ 2877739 (-) True G95172
TU108278 lncRNA downstream 184760 2864769 ~ 2865131 (-) True G95166
TU108273 lncRNA downstream 200988 2848679 ~ 2848903 (-) True G95161
TU108320 lncRNA upstream 40639 3091365 ~ 3091751 (-) True G95203
TU108327 lncRNA upstream 55034 3105760 ~ 3106448 (-) True G95210
TU108429 lncRNA upstream 271354 3322080 ~ 3322366 (-) True CI01000016_03322103_03326683
TU108430 lncRNA upstream 273641 3324367 ~ 3324682 (-) True G95313
TU108432 lncRNA upstream 275186 3325912 ~ 3326175 (-) True G95315
CI01000016_02991852_02994428.mRNA mRNA downstream 55463 2991220 ~ 2994428 (-) True CI01000016_02991852_02994428
CI01000016_02936606_02957342.mRNA mRNA downstream 92016 2936109 ~ 2957875 (-) True CI01000016_02936606_02957342
CI01000016_02884294_02912568.mRNA mRNA downstream 137323 2882846 ~ 2912568 (-) True CI01000016_02884294_02912568
CI01000016_02817855_02829699.mRNA mRNA downstream 219434 2817855 ~ 2830457 (-) True CI01000016_02817855_02829699
CI01000016_02802780_02815803.mRNA mRNA downstream 234088 2802599 ~ 2815803 (-) True CI01000016_02802780_02815803
CI01000016_03060171_03060612.mRNA mRNA upstream 8817 3059543 ~ 3060612 (-) True CI01000016_03060171_03060612
CI01000016_03062846_03063013.mRNA mRNA upstream 12120 3062846 ~ 3063272 (-) True CI01000016_03062846_03063013
CI01000016_03064633_03068201.mRNA mRNA upstream 13836 3064562 ~ 3069092 (-) True CI01000016_03064633_03068201
CI01000016_03072793_03080040.mRNA mRNA upstream 22002 3072728 ~ 3080040 (-) True CI01000016_03072793_03080040
CI01000016_03082653_03084658.mRNA mRNA upstream 31660 3082386 ~ 3084658 (-) True CI01000016_03082653_03084658
TU108180 other downstream 64250 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 773616 2270836 ~ 2276275 (-) True G94786
TU109910 other upstream 584881 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 815035 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 1861982 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 2274793 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 2361533 5415682 ~ 5418217 (-) True G97020

Expression Profile