Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU109908 |
| length | 724 |
| lncRNA type | read_through |
| GC content | 0.40 |
| exon number | 4 |
| gene id | G96626 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 3734525 ~ 3800968 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU109952 | lncRNA | downstream | 100065 | 3634259 ~ 3634460 (-) | True | G96658 |
| TU109893 | lncRNA | downstream | 108521 | 3623837 ~ 3626004 (-) | True | G96614 |
| TU109949 | lncRNA | downstream | 125648 | 3608336 ~ 3608877 (-) | False | G96655 |
| TU109948 | lncRNA | downstream | 125648 | 3608570 ~ 3608877 (-) | True | G96655 |
| TU109926 | lncRNA | downstream | 153096 | 3581219 ~ 3581429 (-) | True | G96644 |
| TU109978 | lncRNA | upstream | 8542 | 3809510 ~ 3811499 (-) | True | G96672 |
| TU109981 | lncRNA | upstream | 18699 | 3819667 ~ 3820628 (-) | True | G96675 |
| TU109911 | lncRNA | upstream | 30557 | 3831525 ~ 3832562 (-) | True | G96629 |
| TU109997 | lncRNA | upstream | 61101 | 3862069 ~ 3887758 (-) | True | G96687 |
| TU109996 | lncRNA | upstream | 62197 | 3863165 ~ 3902758 (-) | True | G96686 |
| CI01000016_03719404_03722988.mRNA | mRNA | downstream | 11467 | 3719167 ~ 3723058 (-) | True | CI01000016_03719404_03722988 |
| CI01000016_03647744_03675574.mRNA | mRNA | downstream | 58940 | 3647653 ~ 3675585 (-) | False | CI01000016_03647744_03675574 |
| CI01000016_03555967_03558776.mRNA | mRNA | downstream | 175339 | 3555300 ~ 3559186 (-) | True | CI01000016_03555967_03558776 |
| CI01000016_03322103_03326683.mRNA | mRNA | downstream | 403763 | 3322003 ~ 3330762 (-) | False | CI01000016_03322103_03326683 |
| CI01000016_03082653_03084658.mRNA | mRNA | downstream | 649867 | 3082386 ~ 3084658 (-) | True | CI01000016_03082653_03084658 |
| CI01000016_03834829_03843163.mRNA | mRNA | upstream | 33532 | 3834500 ~ 3843266 (-) | True | CI01000016_03834829_03843163 |
| CI01000016_03881771_03883341.mRNA | mRNA | upstream | 79525 | 3880493 ~ 3883466 (-) | True | CI01000016_03881771_03883341 |
| CI01000016_03921124_03930996.mRNA | mRNA | upstream | 119087 | 3920055 ~ 3931162 (-) | False | CI01000016_03921124_03930996 |
| CI01000016_04044171_04047247.mRNA | mRNA | upstream | 243047 | 4044015 ~ 4047305 (-) | True | CI01000016_04044171_04047247 |
| CI01000016_04084854_04101874.mRNA | mRNA | upstream | 283756 | 4084724 ~ 4101953 (-) | True | CI01000016_04084854_04101874 |
| TU109910 | other | downstream | 69212 | 3635607 ~ 3665313 (-) | True | G96628 |
| TU108180 | other | downstream | 748884 | 2985260 ~ 2985641 (-) | True | G95070 |
| TU107853 | other | downstream | 1458250 | 2270836 ~ 2276275 (-) | True | G94786 |
| TU110003 | other | upstream | 64793 | 3865761 ~ 3890326 (-) | True | G96690 |
| TU110416 | other | upstream | 1111740 | 4912708 ~ 4923404 (-) | True | G97040 |
| TU110385 | other | upstream | 1524551 | 5325519 ~ 5330846 (-) | True | CI01000016_05325805_05330265 |
| TU110396 | other | upstream | 1611291 | 5415682 ~ 5418217 (-) | True | G97020 |
| TU110786 | other | upstream | 2358018 | 6158986 ~ 6159721 (-) | True | G97341 |
