RNA id: TU109996


Basic Information

Item Value
RNA id TU109996
length 476
lncRNA type read_through
GC content 0.44
exon number 2
gene id G96686
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 3863165 ~ 3902758 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGACTGACGTATGTATGTAAAAAAGAAACGTCTGTTTCCAGTAAGGATTGCATAAACCATAGTGATAGATGCCATCGGCCCATTTGGGGTTTAAGCCGGAACTTTGTGAAGCAGGAAAGTTGAAAACACGCGAACATACAATGTTTTTTTATTACTTCAGTAAGTTTCTGAACAAATTCCTCTTCATTCAGTGTCTGCTCAGTTCTCATCAGTAGCACAGACCTTACCGGACAAATCCAACTTCCAGGAGCTCCAAGTAAGTGTTCACTGGCACGTCTGCAATAGGAGGTACCTTTAGTGCGTGTGTGTGTGTTTGTGTGTGTGCGTGCATATGTTACAGCAGTCGTCCTCTGCATTCTGTTGATCCACAGCAGCACAGAAGCTCCTTGCCCTCTACACTGCCAACTTCATAATTATAATCCCATGTCAACTCCGTCCCTGCTCGGATTCGCCTGCAGAAACACACAGGTTAATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109911 lncRNA downstream 30603 3831525 ~ 3832562 (-) True G96629
TU109981 lncRNA downstream 42537 3819667 ~ 3820628 (-) True G96675
TU109978 lncRNA downstream 51666 3809510 ~ 3811499 (-) True G96672
TU109890 lncRNA downstream 71362 3787406 ~ 3791803 (-) True G96612
TU109904 lncRNA downstream 76390 3780804 ~ 3786775 (-) True G96622
TU110041 lncRNA upstream 64584 3967342 ~ 3967897 (-) True G96719
TU110051 lncRNA upstream 66753 3969511 ~ 3971844 (-) True G96728
TU110052 lncRNA upstream 71049 3973807 ~ 3974048 (-) True G96729
TU110045 lncRNA upstream 77946 3980704 ~ 3984004 (-) False G96723
TU110046 lncRNA upstream 77946 3980704 ~ 3983883 (-) True G96723
CI01000016_03834829_03843163.mRNA mRNA downstream 19899 3834500 ~ 3843266 (-) True CI01000016_03834829_03843163
CI01000016_03719404_03722988.mRNA mRNA downstream 140107 3719167 ~ 3723058 (-) True CI01000016_03719404_03722988
CI01000016_03647744_03675574.mRNA mRNA downstream 187580 3647653 ~ 3675585 (-) False CI01000016_03647744_03675574
CI01000016_03555967_03558776.mRNA mRNA downstream 303979 3555300 ~ 3559186 (-) True CI01000016_03555967_03558776
CI01000016_03322103_03326683.mRNA mRNA downstream 532403 3322003 ~ 3330762 (-) False CI01000016_03322103_03326683
CI01000016_03921124_03930996.mRNA mRNA upstream 17297 3920055 ~ 3931162 (-) False CI01000016_03921124_03930996
CI01000016_04044171_04047247.mRNA mRNA upstream 141257 4044015 ~ 4047305 (-) True CI01000016_04044171_04047247
CI01000016_04084854_04101874.mRNA mRNA upstream 181966 4084724 ~ 4101953 (-) True CI01000016_04084854_04101874
CI01000016_04181435_04188590.mRNA mRNA upstream 278505 4181263 ~ 4188590 (-) True CI01000016_04181435_04188590
CI01000016_04226585_04232287.mRNA mRNA upstream 323681 4226439 ~ 4232287 (-) True CI01000016_04226585_04232287
TU109910 other downstream 197852 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 877524 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1586890 2270836 ~ 2276275 (-) True G94786
TU110416 other upstream 1009950 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1422761 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1509501 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 2256228 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 4986075 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496

Expression Profile