RNA id: TU110145


Basic Information

Item Value
RNA id TU110145
length 370
lncRNA type intronic
GC content 0.25
exon number 2
gene id G96810
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 4182501 ~ 4182967 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGATTCCAAAACGATTCTTGATCTACTTTTTTTTTCTTTTTAAATTAATTAGTTCACTGACTTAAAAACCTTAAAATTCTTACATTAACATATCCTTACATAAGTAATTATAAGTAGGCTAGGCCTACTTTTTAAAATAATTACAAATTGAAAAAAAATAATTAAAACAATTGTATATTAATATTAACTATATTAACTAATATAACTTCAAAACATACAAGCAAGTAGCAAATAATAAATAGGAGCAACGAAACATATTACAAGCAATAAACAAAGAGTACTTTCAGTATTTAAGATTATCTGAACGTTTTCTTTCTCATCTTTACTGTTTGTCCTGTCCATTTAATCCCTTCAGACAAAACTGGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110127 lncRNA downstream 60126 4120516 ~ 4122375 (-) False G96792
TU110126 lncRNA downstream 60212 4120679 ~ 4122289 (-) True G96792
TU110128 lncRNA downstream 62150 4118297 ~ 4120351 (-) True G96793
TU110123 lncRNA downstream 113947 4068353 ~ 4068554 (-) True G96789
TU110122 lncRNA downstream 116620 4065535 ~ 4065881 (-) True G96788
TU110092 lncRNA upstream 139438 4322405 ~ 4367971 (-) True G96758
TU110214 lncRNA upstream 185412 4368379 ~ 4368688 (-) True G96872
TU110197 lncRNA upstream 218757 4401724 ~ 4403376 (-) False G96857
TU110196 lncRNA upstream 224285 4407252 ~ 4413705 (-) True G96857
TU110261 lncRNA upstream 298982 4481949 ~ 4482313 (-) True G96909
CI01000016_04084854_04101874.mRNA mRNA downstream 80548 4084724 ~ 4101953 (-) True CI01000016_04084854_04101874
CI01000016_04044171_04047247.mRNA mRNA downstream 135196 4044015 ~ 4047305 (-) True CI01000016_04044171_04047247
CI01000016_03921124_03930996.mRNA mRNA downstream 251339 3920055 ~ 3931162 (-) False CI01000016_03921124_03930996
CI01000016_03881771_03883341.mRNA mRNA downstream 299035 3880493 ~ 3883466 (-) True CI01000016_03881771_03883341
CI01000016_03834829_03843163.mRNA mRNA downstream 339235 3834500 ~ 3843266 (-) True CI01000016_03834829_03843163
CI01000016_04226585_04232287.mRNA mRNA upstream 43472 4226439 ~ 4232287 (-) True CI01000016_04226585_04232287
CI01000016_04264738_04270463.mRNA mRNA upstream 80962 4263929 ~ 4272171 (-) True CI01000016_04264738_04270463
CI01000016_04277441_04297655.mRNA mRNA upstream 93991 4276958 ~ 4298217 (-) True CI01000016_04277441_04297655
CI01000016_04300720_04301736.mRNA mRNA upstream 117682 4300649 ~ 4303507 (-) True CI01000016_04300720_04301736
CI01000016_04333323_04333836.mRNA mRNA upstream 149906 4332873 ~ 4333836 (-) True CI01000016_04333323_04333836
TU110003 other downstream 251450 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 517188 3635607 ~ 3665313 (-) True G96628
TU108180 other downstream 1196860 2985260 ~ 2985641 (-) True G95070
TU107853 other downstream 1906226 2270836 ~ 2276275 (-) True G94786
TU110416 other upstream 729741 4912708 ~ 4923404 (-) True G97040
TU110385 other upstream 1142552 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110396 other upstream 1229292 5415682 ~ 5418217 (-) True G97020
TU110786 other upstream 1976019 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 4705866 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496

Expression Profile