Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU108840 |
| length | 1723 |
| lncRNA type | antisense_over |
| GC content | 0.39 |
| exon number | 2 |
| gene id | G95692 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 4814181 ~ 4927792 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU108852 | lncRNA | upstream | 71722 | 4852041 ~ 4852964 (+) | True | G95703 |
| TU108615 | lncRNA | upstream | 370676 | 4547513 ~ 4554010 (+) | True | G95489 |
| TU108611 | lncRNA | upstream | 378614 | 4537680 ~ 4546072 (+) | True | G95485 |
| TU108816 | lncRNA | upstream | 407592 | 4516876 ~ 4517094 (+) | True | G95673 |
| TU108560 | lncRNA | upstream | 481039 | 4442438 ~ 4443647 (+) | True | G95434 |
| TU108844 | lncRNA | downstream | 5911 | 4933703 ~ 4935758 (+) | True | CI01000016_04932388_04935392 |
| TU108870 | lncRNA | downstream | 34458 | 4962250 ~ 4962586 (+) | True | G95718 |
| TU108903 | lncRNA | downstream | 52309 | 4980101 ~ 4980313 (+) | True | G95751 |
| TU108878 | lncRNA | downstream | 129204 | 5056996 ~ 5088557 (+) | True | G95726 |
| TU108883 | lncRNA | downstream | 132379 | 5060171 ~ 5091009 (+) | True | G95731 |
| CI01000016_04911596_04920356.mRNA | mRNA | upstream | 3867 | 4910169 ~ 4920819 (+) | True | CI01000016_04911596_04920356 |
| CI01000016_04893170_04904103.mRNA | mRNA | upstream | 20427 | 4893133 ~ 4904259 (+) | True | CI01000016_04893170_04904103 |
| CI01000016_04850826_04860560.mRNA | mRNA | upstream | 64001 | 4850315 ~ 4860685 (+) | True | CI01000016_04850826_04860560 |
| CI01000016_04829592_04837305.mRNA | mRNA | upstream | 87229 | 4829592 ~ 4837457 (+) | False | CI01000016_04829592_04837305 |
| CI01000016_04826146_04828890.mRNA | mRNA | upstream | 95528 | 4826088 ~ 4829158 (+) | True | CI01000016_04826146_04828890 |
| CI01000016_04932388_04935392.mRNA | mRNA | downstream | 4137 | 4931929 ~ 4935904 (+) | False | CI01000016_04932388_04935392 |
| CI01000016_04969263_04970446.mRNA | mRNA | downstream | 40710 | 4968502 ~ 4970632 (+) | True | CI01000016_04969263_04970446 |
| CI01000016_04981918_04985412.mRNA | mRNA | downstream | 53818 | 4981610 ~ 4985635 (+) | True | CI01000016_04981918_04985412 |
| CI01000016_05064542_05068162.mRNA | mRNA | downstream | 135122 | 5062914 ~ 5068810 (+) | True | CI01000016_05064542_05068162 |
| CI01000016_05100744_05111181.mRNA | mRNA | downstream | 172952 | 5100744 ~ 5111389 (+) | True | CI01000016_05100744_05111181 |
| TU108629 | other | upstream | 88031 | 4834558 ~ 4836655 (+) | True | G95503 |
| TU108786 | other | upstream | 650781 | 4272636 ~ 4273905 (+) | True | G95648 |
| TU108565 | other | upstream | 1060829 | 3862175 ~ 3862305 (+) | True | G95439 |
| TU106281 | other | upstream | 3997154 | 905400 ~ 927532 (+) | True | G93406 |
| TU108946 | other | downstream | 292088 | 5219880 ~ 5225941 (+) | True | G95792 |
| TU109033 | other | downstream | 478077 | 5405869 ~ 5407863 (+) | False | CI01000016_05405791_05407797 |
| TU109031 | other | downstream | 478956 | 5406748 ~ 5406829 (+) | True | G95870 |
| TU109637 | other | downstream | 2232849 | 7160641 ~ 7161290 (+) | True | G96389 |
| TU111256 | other | downstream | 2856273 | 7785226 ~ 7785723 (+) | True | G97766 |
