Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU110477 |
| length | 1059 |
| lncRNA type | inter_gene |
| GC content | 0.39 |
| exon number | 1 |
| gene id | G97097 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000016 |
| NCBI id | null |
| chromosome length | 12175457 |
| location | 4962586 ~ 4963644 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU110476 | lncRNA | downstream | 2433 | 4959898 ~ 4960153 (-) | True | G97096 |
| TU110472 | lncRNA | downstream | 4848 | 4957517 ~ 4957738 (-) | True | G97092 |
| TU110471 | lncRNA | downstream | 5142 | 4957201 ~ 4957444 (-) | True | G97091 |
| TU110426 | lncRNA | downstream | 64866 | 4816630 ~ 4897720 (-) | True | G97050 |
| TU110478 | lncRNA | upstream | 764 | 4964408 ~ 4964631 (-) | True | G97098 |
| TU110480 | lncRNA | upstream | 2450 | 4966094 ~ 4966306 (-) | True | G97100 |
| TU110481 | lncRNA | upstream | 3358 | 4967002 ~ 4967302 (-) | True | G97101 |
| TU110413 | lncRNA | upstream | 5745 | 4969389 ~ 4970780 (-) | True | G97037 |
| TU110421 | lncRNA | upstream | 104040 | 5067684 ~ 5073528 (-) | True | G97045 |
| CI01000016_04936283_04939240.mRNA | mRNA | downstream | 23346 | 4936013 ~ 4939240 (-) | True | CI01000016_04936283_04939240 |
| CI01000016_04927541_04930989.mRNA | mRNA | downstream | 31597 | 4926094 ~ 4930989 (-) | True | CI01000016_04927541_04930989 |
| CI01000016_04921091_04922518.mRNA | mRNA | downstream | 40068 | 4920868 ~ 4922518 (-) | False | CI01000016_04921091_04922518 |
| CI01000016_04802496_04812976.mRNA | mRNA | downstream | 149320 | 4802454 ~ 4813266 (-) | True | CI01000016_04802496_04812976 |
| CI01000016_04696937_04698098.mRNA | mRNA | downstream | 263968 | 4696685 ~ 4698618 (-) | True | CI01000016_04696937_04698098 |
| CI01000016_04971399_04981029.mRNA | mRNA | upstream | 7698 | 4971342 ~ 4981400 (-) | True | CI01000016_04971399_04981029 |
| CI01000016_04995532_04996727.mRNA | mRNA | upstream | 31168 | 4994812 ~ 4996727 (-) | True | CI01000016_04995532_04996727 |
| CI01000016_05011639_05013290.mRNA | mRNA | upstream | 46129 | 5009773 ~ 5013290 (-) | True | CI01000016_05011639_05013290 |
| CI01000016_05037135_05040030.mRNA | mRNA | upstream | 73491 | 5037135 ~ 5041364 (-) | True | CI01000016_05037135_05040030 |
| CI01000016_05052905_05056425.mRNA | mRNA | upstream | 88731 | 5052375 ~ 5056425 (-) | True | CI01000016_05052905_05056425 |
| TU110416 | other | downstream | 39182 | 4912708 ~ 4923404 (-) | True | G97040 |
| TU110003 | other | downstream | 1031535 | 3865761 ~ 3890326 (-) | True | G96690 |
| TU109910 | other | downstream | 1297273 | 3635607 ~ 3665313 (-) | True | G96628 |
| TU108180 | other | downstream | 1976945 | 2985260 ~ 2985641 (-) | True | G95070 |
| TU107853 | other | downstream | 2686311 | 2270836 ~ 2276275 (-) | True | G94786 |
| TU110385 | other | upstream | 361875 | 5325519 ~ 5330846 (-) | True | CI01000016_05325805_05330265 |
| TU110396 | other | upstream | 448615 | 5415682 ~ 5418217 (-) | True | G97020 |
| TU110786 | other | upstream | 1195342 | 6158986 ~ 6159721 (-) | True | G97341 |
| TU112287 | other | upstream | 3925189 | 8888833 ~ 8894737 (-) | True | CI01000016_08893013_08893496 |
| TU112294 | other | upstream | 3973145 | 8936789 ~ 8936818 (-) | True | G98677 |
