RNA id: TU109034


Basic Information

Item Value
RNA id TU109034
length 222
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G95871
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5411482 ~ 5411703 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTTATCAAAACAAAGAATTACTCAGAGAAGACACTTGTATCACAGATGTTTTGTTTCCCGGACAGGTCTTGTGTTCATAGCAAGTTGCTTTCTGCAGTCTTTTTATCATGTCTGTCGCCCCCTACTGTTTGATCTGTCTATAACATTTCATGACACTACATGCAAATTGGCCTCTTATTTTAATAGAATACGTGATTTAAACGTTCGGACGTAAACACGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108984 lncRNA upstream 36215 5371328 ~ 5375267 (+) True G95824
TU108974 lncRNA upstream 81824 5327611 ~ 5329658 (+) True G95814
TU108948 lncRNA upstream 85567 5233196 ~ 5325915 (+) True G95793
TU109006 lncRNA upstream 153315 5256601 ~ 5258167 (+) True G95845
TU109004 lncRNA upstream 154582 5256515 ~ 5256900 (+) True G95844
TU108963 lncRNA downstream 535 5412238 ~ 5418215 (+) True G95803
TU109039 lncRNA downstream 9464 5421167 ~ 5421768 (+) True G95876
TU109044 lncRNA downstream 13666 5425369 ~ 5434373 (+) False G95880
TU109047 lncRNA downstream 13666 5425369 ~ 5434373 (+) True G95880
TU108961 lncRNA downstream 46139 5457842 ~ 5458207 (+) True G95801
CI01000016_05405791_05407797.mRNA mRNA upstream 3519 5405791 ~ 5407963 (+) False CI01000016_05405791_05407797
CI01000016_05398036_05400369.mRNA mRNA upstream 11076 5398036 ~ 5400406 (+) True CI01000016_05398036_05400369
CI01000016_05388832_05396460.mRNA mRNA upstream 14402 5388832 ~ 5397080 (+) True CI01000016_05388832_05396460
CI01000016_05381573_05383796.mRNA mRNA upstream 27664 5380917 ~ 5383818 (+) True CI01000016_05381573_05383796
CI01000016_05335334_05352325.mRNA mRNA upstream 58815 5335334 ~ 5352667 (+) True CI01000016_05335334_05352325
CI01000016_05445824_05454816.mRNA mRNA downstream 34121 5445824 ~ 5455416 (+) True CI01000016_05445824_05454816
CI01000016_05475350_05482964.mRNA mRNA downstream 63647 5475350 ~ 5483946 (+) True CI01000016_05475350_05482964
CI01000016_05488887_05502270.mRNA mRNA downstream 77184 5488887 ~ 5502350 (+) False CI01000016_05488887_05502270
CI01000016_05698858_05706081.mRNA mRNA downstream 287155 5698858 ~ 5706719 (+) True CI01000016_05698858_05706081
CI01000016_05797506_05798075.mRNA mRNA downstream 385803 5797506 ~ 5799585 (+) True CI01000016_05797506_05798075
TU109033 other upstream 3619 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 3619 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 185541 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 574827 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 1137577 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 1748938 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 2372362 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 2602660 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 3584395 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 4383928 9795631 ~ 9795684 (+) True G99016

Expression Profile