RNA id: TU108965


Basic Information

Item Value
RNA id TU108965
length 253
lncRNA type intronic
GC content 0.45
exon number 1
gene id G95805
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5461890 ~ 5462142 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGCAGCTTGTCAGGTTCAGTGTTGGAGGTTGGATGAATGTTAGCGTTCTGGTTTTGGTTTAGGTTGGGGATAAAACTAGAGTTAGTATTGGGTGTATTTGGGTTGAAGTTGCCGTTGGTATTGAGGTTTGGGTTAAAAGTAGAGTTTGGGTTGGTATACTGGTTAATATTGGGGTTTGGACAGGGGCAGGGGGAGAGAGGAGGCAGGGTTGGGGTGTGGAGTGGTGTACTATCATGGGTAAATCCAAGTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU108961 lncRNA upstream 3683 5457842 ~ 5458207 (+) True G95801
TU109044 lncRNA upstream 27517 5425369 ~ 5434373 (+) False G95880
TU109047 lncRNA upstream 27517 5425369 ~ 5434373 (+) True G95880
TU109039 lncRNA upstream 40122 5421167 ~ 5421768 (+) True G95876
TU108963 lncRNA upstream 43675 5412238 ~ 5418215 (+) True G95803
TU109051 lncRNA downstream 576 5462718 ~ 5462924 (+) True G95884
TU109052 lncRNA downstream 886 5463028 ~ 5463257 (+) True G95885
TU108964 lncRNA downstream 4528 5466670 ~ 5466983 (+) True G95804
TU108966 lncRNA downstream 22063 5484205 ~ 5489123 (+) False CI01000016_05488887_05502270
TU108991 lncRNA downstream 32099 5494241 ~ 5494914 (+) True G95831
CI01000016_05445824_05454816.mRNA mRNA upstream 6474 5445824 ~ 5455416 (+) True CI01000016_05445824_05454816
CI01000016_05405791_05407797.mRNA mRNA upstream 53927 5405791 ~ 5407963 (+) False CI01000016_05405791_05407797
CI01000016_05398036_05400369.mRNA mRNA upstream 61484 5398036 ~ 5400406 (+) True CI01000016_05398036_05400369
CI01000016_05388832_05396460.mRNA mRNA upstream 64810 5388832 ~ 5397080 (+) True CI01000016_05388832_05396460
CI01000016_05381573_05383796.mRNA mRNA upstream 78072 5380917 ~ 5383818 (+) True CI01000016_05381573_05383796
CI01000016_05475350_05482964.mRNA mRNA downstream 13208 5475350 ~ 5483946 (+) True CI01000016_05475350_05482964
CI01000016_05488887_05502270.mRNA mRNA downstream 26745 5488887 ~ 5502350 (+) False CI01000016_05488887_05502270
CI01000016_05698858_05706081.mRNA mRNA downstream 236716 5698858 ~ 5706719 (+) True CI01000016_05698858_05706081
CI01000016_05797506_05798075.mRNA mRNA downstream 335364 5797506 ~ 5799585 (+) True CI01000016_05797506_05798075
CI01000016_05828974_05833309.mRNA mRNA downstream 366256 5828398 ~ 5833377 (+) True CI01000016_05828974_05833309
TU109033 other upstream 54027 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 54027 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 235949 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 625235 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 1187985 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 1698499 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 2321923 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 2552221 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 3533956 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 4333489 9795631 ~ 9795684 (+) True G99016

Expression Profile