RNA id: TU109052


Basic Information

Item Value
RNA id TU109052
length 230
lncRNA type intronic
GC content 0.30
exon number 1
gene id G95885
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5463028 ~ 5463257 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGCATTTACTCATCTCACTTGCACAAAACAGATTCAGTATTCCTCAAACTGAATAAAAACAGTGAAATGCAAACTCAGAATATTAGGCAAACCTGCAACAATTAACTGTTAAATTACACAAATATACTTTATGTATTTAATGTCACTTTATTAAGAAATAAACATAACATTTGTGTTTCATTTTTTTAATTGCTGAAGACTGTTGAACTTTCTTCTCCTGCATCCTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109051 lncRNA upstream 104 5462718 ~ 5462924 (+) True G95884
TU108965 lncRNA upstream 886 5461890 ~ 5462142 (+) True G95805
TU108961 lncRNA upstream 4821 5457842 ~ 5458207 (+) True G95801
TU109044 lncRNA upstream 28655 5425369 ~ 5434373 (+) False G95880
TU109047 lncRNA upstream 28655 5425369 ~ 5434373 (+) True G95880
TU108964 lncRNA downstream 3413 5466670 ~ 5466983 (+) True G95804
TU108966 lncRNA downstream 20948 5484205 ~ 5489123 (+) False CI01000016_05488887_05502270
TU108991 lncRNA downstream 30984 5494241 ~ 5494914 (+) True G95831
TU108987 lncRNA downstream 32750 5496007 ~ 5496503 (+) False CI01000016_05488887_05502270
TU109055 lncRNA downstream 33386 5496643 ~ 5496842 (+) True G95888
CI01000016_05445824_05454816.mRNA mRNA upstream 7612 5445824 ~ 5455416 (+) True CI01000016_05445824_05454816
CI01000016_05405791_05407797.mRNA mRNA upstream 55065 5405791 ~ 5407963 (+) False CI01000016_05405791_05407797
CI01000016_05398036_05400369.mRNA mRNA upstream 62622 5398036 ~ 5400406 (+) True CI01000016_05398036_05400369
CI01000016_05388832_05396460.mRNA mRNA upstream 65948 5388832 ~ 5397080 (+) True CI01000016_05388832_05396460
CI01000016_05381573_05383796.mRNA mRNA upstream 79210 5380917 ~ 5383818 (+) True CI01000016_05381573_05383796
CI01000016_05475350_05482964.mRNA mRNA downstream 12093 5475350 ~ 5483946 (+) True CI01000016_05475350_05482964
CI01000016_05488887_05502270.mRNA mRNA downstream 25630 5488887 ~ 5502350 (+) False CI01000016_05488887_05502270
CI01000016_05698858_05706081.mRNA mRNA downstream 235601 5698858 ~ 5706719 (+) True CI01000016_05698858_05706081
CI01000016_05797506_05798075.mRNA mRNA downstream 334249 5797506 ~ 5799585 (+) True CI01000016_05797506_05798075
CI01000016_05828974_05833309.mRNA mRNA downstream 365141 5828398 ~ 5833377 (+) True CI01000016_05828974_05833309
TU109033 other upstream 55165 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 55165 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 237087 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 626373 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 1189123 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 1697384 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 2320808 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 2551106 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 3532841 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 4332374 9795631 ~ 9795684 (+) True G99016

Expression Profile