RNA id: TU109060


Basic Information

Item Value
RNA id TU109060
length 297
lncRNA type intronic
GC content 0.41
exon number 1
gene id G95893
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5500828 ~ 5501124 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAAAAATGCATCCATCCATAATCAAAGTAATCCATACGGCTCCAGTGGGTTAATAAAGGCCTTTTGAAGTGAAGCGATGGGTTTTTGTAATAAAAATATCTATATTTGAAACTTCAAATAACTAGCTTCCGGTGGACGACCGCATATGCATACTGCGTAACTCGACTAAATGAGTAATCCTCTGACGCGATGTATGACGCAGGATGTAGGAGAACTGTAAGCTTAGACGCCTCTCATGGTTCAAACAAATAGGGCTGTGCAACAAACTCAAGCTCCTCTTCACTTGTATCCGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109059 lncRNA upstream 34 5500417 ~ 5500794 (+) True G95892
TU109058 lncRNA upstream 686 5499790 ~ 5500142 (+) True G95891
TU109057 lncRNA upstream 1173 5499358 ~ 5499655 (+) True G95890
TU109056 lncRNA upstream 1871 5498268 ~ 5498957 (+) True G95889
TU109055 lncRNA upstream 3986 5496643 ~ 5496842 (+) True G95888
TU109061 lncRNA downstream 7 5501131 ~ 5501351 (+) True G95894
TU108992 lncRNA downstream 755 5501879 ~ 5504239 (+) True CI01000016_05488887_05502270
TU108971 lncRNA downstream 18014 5519138 ~ 5528039 (+) True G95811
TU109063 lncRNA downstream 44615 5545739 ~ 5545986 (+) True G95896
TU109064 lncRNA downstream 45022 5546146 ~ 5546391 (+) True G95897
CI01000016_05475350_05482964.mRNA mRNA upstream 16882 5475350 ~ 5483946 (+) True CI01000016_05475350_05482964
CI01000016_05445824_05454816.mRNA mRNA upstream 45412 5445824 ~ 5455416 (+) True CI01000016_05445824_05454816
CI01000016_05405791_05407797.mRNA mRNA upstream 92865 5405791 ~ 5407963 (+) False CI01000016_05405791_05407797
CI01000016_05398036_05400369.mRNA mRNA upstream 100422 5398036 ~ 5400406 (+) True CI01000016_05398036_05400369
CI01000016_05388832_05396460.mRNA mRNA upstream 103748 5388832 ~ 5397080 (+) True CI01000016_05388832_05396460
CI01000016_05698858_05706081.mRNA mRNA downstream 197734 5698858 ~ 5706719 (+) True CI01000016_05698858_05706081
CI01000016_05797506_05798075.mRNA mRNA downstream 296382 5797506 ~ 5799585 (+) True CI01000016_05797506_05798075
CI01000016_05828974_05833309.mRNA mRNA downstream 327274 5828398 ~ 5833377 (+) True CI01000016_05828974_05833309
CI01000016_05837368_05837667.mRNA mRNA downstream 335459 5836583 ~ 5837927 (+) True CI01000016_05837368_05837667
CI01000016_05878037_05885761.mRNA mRNA downstream 376913 5878037 ~ 5886192 (+) True CI01000016_05878037_05885761
TU109033 other upstream 92965 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 92965 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 274887 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 664173 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 1226923 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 1659517 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 2282941 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 2513239 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 3494974 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 4294507 9795631 ~ 9795684 (+) True G99016

Expression Profile