RNA id: TU109064


Basic Information

Item Value
RNA id TU109064
length 246
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G95897
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5546146 ~ 5546391 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGGATCAATGCATATTGTGGTGCTTAAGTTTACACCACACATACAAACAAACACAAAAAAAGACATCCTAATGATGTAATAATCATAGTGGCCATTTGCAAGAAACAAATTGTTCCATTTTCTAACAGTTTAAATCTGGTTAACACCTACCATTCATTATTTTCATTCACATTAATGTAACATTAATTTTGCAATAAAACCTTATGGAACATTTGACGGTGTTCAAAACATTTATAGATTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109063 lncRNA upstream 160 5545739 ~ 5545986 (+) True G95896
TU108971 lncRNA upstream 18107 5519138 ~ 5528039 (+) True G95811
TU108992 lncRNA upstream 41907 5501879 ~ 5504239 (+) True CI01000016_05488887_05502270
TU109061 lncRNA upstream 44795 5501131 ~ 5501351 (+) True G95894
TU109060 lncRNA upstream 45022 5500828 ~ 5501124 (+) True G95893
TU109065 lncRNA downstream 16924 5563315 ~ 5563610 (+) True G95898
TU108973 lncRNA downstream 18821 5565212 ~ 5566153 (+) True G95813
TU109070 lncRNA downstream 33180 5579571 ~ 5581894 (+) True G95902
TU109074 lncRNA downstream 54397 5600788 ~ 5601022 (+) True G95905
TU109075 lncRNA downstream 54773 5601164 ~ 5601424 (+) True G95906
CI01000016_05488887_05502270.mRNA mRNA upstream 43796 5488887 ~ 5502350 (+) False CI01000016_05488887_05502270
CI01000016_05475350_05482964.mRNA mRNA upstream 62200 5475350 ~ 5483946 (+) True CI01000016_05475350_05482964
CI01000016_05445824_05454816.mRNA mRNA upstream 90730 5445824 ~ 5455416 (+) True CI01000016_05445824_05454816
CI01000016_05405791_05407797.mRNA mRNA upstream 138183 5405791 ~ 5407963 (+) False CI01000016_05405791_05407797
CI01000016_05398036_05400369.mRNA mRNA upstream 145740 5398036 ~ 5400406 (+) True CI01000016_05398036_05400369
CI01000016_05698858_05706081.mRNA mRNA downstream 152467 5698858 ~ 5706719 (+) True CI01000016_05698858_05706081
CI01000016_05797506_05798075.mRNA mRNA downstream 251115 5797506 ~ 5799585 (+) True CI01000016_05797506_05798075
CI01000016_05828974_05833309.mRNA mRNA downstream 282007 5828398 ~ 5833377 (+) True CI01000016_05828974_05833309
CI01000016_05837368_05837667.mRNA mRNA downstream 290192 5836583 ~ 5837927 (+) True CI01000016_05837368_05837667
CI01000016_05878037_05885761.mRNA mRNA downstream 331646 5878037 ~ 5886192 (+) True CI01000016_05878037_05885761
TU109033 other upstream 138283 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 138283 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 320205 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 709491 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 1272241 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 1614250 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 2237674 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 2467972 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 3449707 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 4249240 9795631 ~ 9795684 (+) True G99016

Expression Profile