RNA id: TU109065


Basic Information

Item Value
RNA id TU109065
length 296
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G95898
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5563315 ~ 5563610 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCGGTGGGGTTATGGTATGGGCAGGCGTATGTTATGGACAACGAACACAGGTGCATTTTATTGATGGCATTTTAAATGCACAGAGATACCGTGACGAGATCCTGAGGCCCATTGTTGTGCCATTCATCCACGACCATCACCTCATGTTGCAGCATGATAATGCACGGCCCCATGTTGCAAGGATCTGTACACAATTCCTGGAAGCTGAAAACATCCCAGTTCTTGCATGGCCAGCATACTCTCCGGACATGTCACCCATTGAGCATGTTTGGGATGCTCTGGATCGGCTTATACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109064 lncRNA upstream 16924 5546146 ~ 5546391 (+) True G95897
TU109063 lncRNA upstream 17329 5545739 ~ 5545986 (+) True G95896
TU108971 lncRNA upstream 35276 5519138 ~ 5528039 (+) True G95811
TU108992 lncRNA upstream 59076 5501879 ~ 5504239 (+) True CI01000016_05488887_05502270
TU109061 lncRNA upstream 61964 5501131 ~ 5501351 (+) True G95894
TU108973 lncRNA downstream 1602 5565212 ~ 5566153 (+) True G95813
TU109070 lncRNA downstream 15961 5579571 ~ 5581894 (+) True G95902
TU109074 lncRNA downstream 37178 5600788 ~ 5601022 (+) True G95905
TU109075 lncRNA downstream 37554 5601164 ~ 5601424 (+) True G95906
TU109077 lncRNA downstream 39196 5602806 ~ 5603260 (+) True G95908
CI01000016_05488887_05502270.mRNA mRNA upstream 60965 5488887 ~ 5502350 (+) False CI01000016_05488887_05502270
CI01000016_05475350_05482964.mRNA mRNA upstream 79369 5475350 ~ 5483946 (+) True CI01000016_05475350_05482964
CI01000016_05445824_05454816.mRNA mRNA upstream 107899 5445824 ~ 5455416 (+) True CI01000016_05445824_05454816
CI01000016_05405791_05407797.mRNA mRNA upstream 155352 5405791 ~ 5407963 (+) False CI01000016_05405791_05407797
CI01000016_05398036_05400369.mRNA mRNA upstream 162909 5398036 ~ 5400406 (+) True CI01000016_05398036_05400369
CI01000016_05698858_05706081.mRNA mRNA downstream 135248 5698858 ~ 5706719 (+) True CI01000016_05698858_05706081
CI01000016_05797506_05798075.mRNA mRNA downstream 233896 5797506 ~ 5799585 (+) True CI01000016_05797506_05798075
CI01000016_05828974_05833309.mRNA mRNA downstream 264788 5828398 ~ 5833377 (+) True CI01000016_05828974_05833309
CI01000016_05837368_05837667.mRNA mRNA downstream 272973 5836583 ~ 5837927 (+) True CI01000016_05837368_05837667
CI01000016_05878037_05885761.mRNA mRNA downstream 314427 5878037 ~ 5886192 (+) True CI01000016_05878037_05885761
TU109033 other upstream 155452 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 155452 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 337374 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 726660 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 1289410 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 1597031 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 2220455 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 2450753 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 3432488 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 4232021 9795631 ~ 9795684 (+) True G99016

Expression Profile