RNA id: TU110640


Basic Information

Item Value
RNA id TU110640
length 957
lncRNA type intronic
GC content 0.36
exon number 1
gene id G97203
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5565197 ~ 5566153 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGACAGAATTTTCATTTTTGGGTGAACTAACCCTTTAAGTGTTACTTATTATATTGCCAAAATGGTCTCAAATCTGCCTTTGAATTCTCGTGTTTATGGATGAATTAATTGGTGTTGTGTTTATTTGGTTGAAGCTGGTACTATATGAATATGGTCACTATGAGGTCTCAGAGATCAGCATGAACTTGTCTTGCATAGTGAAATTCATGATGTCTGACCTGGAAAGATCTGCGGCTGCACACTGTGCCCAAAATGCCCAACTAAAACAACTTGAACGTTGCACTGACGTCAAAATACTGCCAACAGAAAAGTAGGACGTGGGAAAGATAGGAGAGGAGGAGTGACAGGTTAGGTGAAAGCAGATGTGTGAAGGTATGATGAAGATAATTGAAATTAATTTACTAATTAAAAAACATACTTTTCGGTATCATGTCCATTATCCCTGGAATTTGTAACAAGGCAAAATTTACTGATTACTGCCTGGTCATGGTCAGATTTCCCCAGCCTTTTATTTTATCACAGGGTTGCTGATCTTGTGGTTTTGTAAATGGGATACTTTGTAAACCAGGGTGCTCCTGGAGATATACTGTACATTTCTGCAGATTTAGTTCCATTTACCTCACACCTGCCTGTTACTTTCTGTTGAATCCAACCACTTAGCAGCGGTGTTTGATTTGGGGTTGGAACTAAACTTTGTAGCAAAGTAGATCTACGCAAACAAACATTAGATTAAAAATGCTTAAATATTAATGTACTGATTAGTGAAAATTCTATGTATTGATGTAATTACACTGTTTACAATGTCTGTATGTGTTTCCAATCACAATAAACAGTTAAACCTCAGTATCAAAACTGATTTGATTAAATGCACAGATAGATACATAGATAGATAGATAGAACCATTGCACAATAATTTTGTATTGAGTTGTTTTGTGTTTTCAAAGTGTGAAAATAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110571 lncRNA downstream 11211 5553295 ~ 5553986 (-) True G97180
TU110556 lncRNA downstream 153277 5411655 ~ 5411920 (-) True G97165
TU110551 lncRNA downstream 162828 5402143 ~ 5402369 (-) True G97160
TU110408 lncRNA downstream 178732 5345401 ~ 5349517 (-) True G97032
TU110539 lncRNA downstream 223397 5341039 ~ 5341800 (-) True G97148
TU110652 lncRNA upstream 140 5566293 ~ 5573569 (-) True G97215
TU110689 lncRNA upstream 211251 5777404 ~ 5777668 (-) True G97252
TU110692 lncRNA upstream 268417 5834570 ~ 5834911 (-) True G97255
TU110595 lncRNA upstream 315224 5881377 ~ 5886137 (-) False G97185
TU110589 lncRNA upstream 316525 5882678 ~ 5887097 (-) False G97185
CI01000016_05547222_05557502.mRNA mRNA downstream 7695 5547039 ~ 5557502 (-) True CI01000016_05547222_05557502
CI01000016_05508930_05523828.mRNA mRNA downstream 41369 5508087 ~ 5523828 (-) True CI01000016_05508930_05523828
CI01000016_05468882_05473383.mRNA mRNA downstream 91814 5468763 ~ 5473383 (-) True CI01000016_05468882_05473383
CI01000016_05461674_05464777.mRNA mRNA downstream 100420 5461674 ~ 5464777 (-) True CI01000016_05461674_05464777
CI01000016_05426889_05429942.mRNA mRNA downstream 135255 5425776 ~ 5429942 (-) True CI01000016_05426889_05429942
CI01000016_05615909_05656109.mRNA mRNA upstream 48614 5614767 ~ 5656109 (-) True CI01000016_05615909_05656109
CI01000016_05734861_05742853.mRNA mRNA upstream 168409 5734562 ~ 5742853 (-) True CI01000016_05734861_05742853
CI01000016_05759240_05762146.mRNA mRNA upstream 192831 5758984 ~ 5763974 (-) True CI01000016_05759240_05762146
CI01000016_05765402_05775268.mRNA mRNA upstream 198623 5764776 ~ 5775297 (-) True CI01000016_05765402_05775268
CI01000016_05781693_05789936.mRNA mRNA upstream 215036 5781189 ~ 5790363 (-) True CI01000016_05781693_05789936
TU110396 other downstream 146980 5415682 ~ 5418217 (-) True G97020
TU110385 other downstream 234351 5325519 ~ 5330846 (-) True CI01000016_05325805_05330265
TU110416 other downstream 641793 4912708 ~ 4923404 (-) True G97040
TU110003 other downstream 1634146 3865761 ~ 3890326 (-) True G96690
TU109910 other downstream 1899884 3635607 ~ 3665313 (-) True G96628
TU110786 other upstream 592833 6158986 ~ 6159721 (-) True G97341
TU112287 other upstream 3322680 8888833 ~ 8894737 (-) True CI01000016_08893013_08893496
TU112294 other upstream 3370636 8936789 ~ 8936818 (-) True G98677
TU112296 other upstream 3668843 9234996 ~ 9239929 (-) True G98679
TU112308 other upstream 3689949 9256102 ~ 9257611 (-) True G98691

Expression Profile