RNA id: TU109074


Basic Information

Item Value
RNA id TU109074
length 235
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G95905
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5600788 ~ 5601022 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTAAAGGGGAGTGTTTTATCATCAGTTTGCTAAGCAATGCAGTTTGCTGAGCAATGCTGCTTAATAAGAATGAAACAAAACTTCTCACAAATTTCTCATCTGAAAGGGGCATAAACTGTAGGTAATCACAGCAACAGATTATGTATTTTTTAGTGCTGTCAAACGATTATACATTTAATACATGTATATATATTAAAGTAATATATTTAATATAAAACTAATATAAATATTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109070 lncRNA upstream 18894 5579571 ~ 5581894 (+) True G95902
TU108973 lncRNA upstream 34635 5565212 ~ 5566153 (+) True G95813
TU109065 lncRNA upstream 37178 5563315 ~ 5563610 (+) True G95898
TU109064 lncRNA upstream 54397 5546146 ~ 5546391 (+) True G95897
TU109063 lncRNA upstream 54802 5545739 ~ 5545986 (+) True G95896
TU109075 lncRNA downstream 142 5601164 ~ 5601424 (+) True G95906
TU109077 lncRNA downstream 1784 5602806 ~ 5603260 (+) True G95908
TU109078 lncRNA downstream 2280 5603302 ~ 5603833 (+) True G95909
TU109079 lncRNA downstream 3120 5604142 ~ 5604959 (+) True G95910
TU109080 lncRNA downstream 3949 5604971 ~ 5605216 (+) True G95911
CI01000016_05488887_05502270.mRNA mRNA upstream 98438 5488887 ~ 5502350 (+) False CI01000016_05488887_05502270
CI01000016_05475350_05482964.mRNA mRNA upstream 116842 5475350 ~ 5483946 (+) True CI01000016_05475350_05482964
CI01000016_05445824_05454816.mRNA mRNA upstream 145372 5445824 ~ 5455416 (+) True CI01000016_05445824_05454816
CI01000016_05405791_05407797.mRNA mRNA upstream 192825 5405791 ~ 5407963 (+) False CI01000016_05405791_05407797
CI01000016_05398036_05400369.mRNA mRNA upstream 200382 5398036 ~ 5400406 (+) True CI01000016_05398036_05400369
CI01000016_05698858_05706081.mRNA mRNA downstream 97836 5698858 ~ 5706719 (+) True CI01000016_05698858_05706081
CI01000016_05797506_05798075.mRNA mRNA downstream 196484 5797506 ~ 5799585 (+) True CI01000016_05797506_05798075
CI01000016_05828974_05833309.mRNA mRNA downstream 227376 5828398 ~ 5833377 (+) True CI01000016_05828974_05833309
CI01000016_05837368_05837667.mRNA mRNA downstream 235561 5836583 ~ 5837927 (+) True CI01000016_05837368_05837667
CI01000016_05878037_05885761.mRNA mRNA downstream 277015 5878037 ~ 5886192 (+) True CI01000016_05878037_05885761
TU109033 other upstream 192925 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 192925 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 374847 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 764133 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 1326883 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 1559619 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 2183043 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 2413341 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 3395076 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 4194609 9795631 ~ 9795684 (+) True G99016

Expression Profile