RNA id: TU109082


Basic Information

Item Value
RNA id TU109082
length 282
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G95913
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5605992 ~ 5606273 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCGACCAGAATCTGACCAATTACATGAATCTATTACAGCAAAATGAAAACATCCAAATGTGCTTGCGTCTGGTCTTGCTTTTCCAACTTTCAAATGAAATTAGACACAAATTACATTTCAGAAACATTGCTTCTGGAAACCAAAAGACACCGGCAGATTGCTTCTGCTTTCCCACAGAAAACTATTCAACTGTGCCATTGCATAATGATCACATTTAAAGTTAAGATATGCATCTGTTATTTTAAAGTAAATAAAAATGAAAAGTTTATAAGAGGATTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109081 lncRNA upstream 6 5605419 ~ 5605986 (+) True G95912
TU109080 lncRNA upstream 776 5604971 ~ 5605216 (+) True G95911
TU109079 lncRNA upstream 1033 5604142 ~ 5604959 (+) True G95910
TU109078 lncRNA upstream 2159 5603302 ~ 5603833 (+) True G95909
TU109077 lncRNA upstream 2732 5602806 ~ 5603260 (+) True G95908
TU109083 lncRNA downstream 430 5606703 ~ 5607343 (+) True G95914
TU109084 lncRNA downstream 1354 5607627 ~ 5607909 (+) True G95915
TU109088 lncRNA downstream 4605 5610878 ~ 5615490 (+) True G95918
TU109105 lncRNA downstream 43579 5649852 ~ 5653635 (+) True G95933
TU109216 lncRNA downstream 120572 5726845 ~ 5727075 (+) True G96034
CI01000016_05488887_05502270.mRNA mRNA upstream 103642 5488887 ~ 5502350 (+) False CI01000016_05488887_05502270
CI01000016_05475350_05482964.mRNA mRNA upstream 122046 5475350 ~ 5483946 (+) True CI01000016_05475350_05482964
CI01000016_05445824_05454816.mRNA mRNA upstream 150576 5445824 ~ 5455416 (+) True CI01000016_05445824_05454816
CI01000016_05405791_05407797.mRNA mRNA upstream 198029 5405791 ~ 5407963 (+) False CI01000016_05405791_05407797
CI01000016_05398036_05400369.mRNA mRNA upstream 205586 5398036 ~ 5400406 (+) True CI01000016_05398036_05400369
CI01000016_05698858_05706081.mRNA mRNA downstream 92585 5698858 ~ 5706719 (+) True CI01000016_05698858_05706081
CI01000016_05797506_05798075.mRNA mRNA downstream 191233 5797506 ~ 5799585 (+) True CI01000016_05797506_05798075
CI01000016_05828974_05833309.mRNA mRNA downstream 222125 5828398 ~ 5833377 (+) True CI01000016_05828974_05833309
CI01000016_05837368_05837667.mRNA mRNA downstream 230310 5836583 ~ 5837927 (+) True CI01000016_05837368_05837667
CI01000016_05878037_05885761.mRNA mRNA downstream 271764 5878037 ~ 5886192 (+) True CI01000016_05878037_05885761
TU109033 other upstream 198129 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 198129 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 380051 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 769337 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 1332087 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 1554368 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 2177792 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 2408090 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 3389825 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 4189358 9795631 ~ 9795684 (+) True G99016

Expression Profile