RNA id: TU109217


Basic Information

Item Value
RNA id TU109217
length 207
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G96035
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5732257 ~ 5732463 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACTGCTTCAGGAAGCTTTGGAGCGTTATGAATCAGCGTGTCGAATCCGCAGTTCGGAGCGCCAAAGTCACGTGATTTCAGCAGTTTGGCGGTTTGACACGCGATCCGAATCATGATTCGACACGCTGATTCATTATGCTCCGAATCTTCCTGAAGCAGTGTTTTGAAATCGGCCATCACTAAATAAGTCGTTATTTTGTTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109216 lncRNA upstream 5182 5726845 ~ 5727075 (+) True G96034
TU109105 lncRNA upstream 78622 5649852 ~ 5653635 (+) True G95933
TU109088 lncRNA upstream 116767 5610878 ~ 5615490 (+) True G95918
TU109084 lncRNA upstream 124348 5607627 ~ 5607909 (+) True G95915
TU109083 lncRNA upstream 124914 5606703 ~ 5607343 (+) True G95914
TU109231 lncRNA downstream 23175 5755638 ~ 5755894 (+) True G96047
TU109232 lncRNA downstream 23634 5756097 ~ 5756378 (+) True G96048
TU109256 lncRNA downstream 43597 5776060 ~ 5776310 (+) True G96058
TU109274 lncRNA downstream 190298 5922761 ~ 5922984 (+) True G96076
TU109134 lncRNA downstream 191714 5965086 ~ 5965357 (+) True CI01000016_05966893_05982233
CI01000016_05698858_05706081.mRNA mRNA upstream 25538 5698858 ~ 5706719 (+) True CI01000016_05698858_05706081
CI01000016_05488887_05502270.mRNA mRNA upstream 229907 5488887 ~ 5502350 (+) False CI01000016_05488887_05502270
CI01000016_05475350_05482964.mRNA mRNA upstream 248311 5475350 ~ 5483946 (+) True CI01000016_05475350_05482964
CI01000016_05445824_05454816.mRNA mRNA upstream 276841 5445824 ~ 5455416 (+) True CI01000016_05445824_05454816
CI01000016_05405791_05407797.mRNA mRNA upstream 324294 5405791 ~ 5407963 (+) False CI01000016_05405791_05407797
CI01000016_05797506_05798075.mRNA mRNA downstream 65043 5797506 ~ 5799585 (+) True CI01000016_05797506_05798075
CI01000016_05828974_05833309.mRNA mRNA downstream 95935 5828398 ~ 5833377 (+) True CI01000016_05828974_05833309
CI01000016_05837368_05837667.mRNA mRNA downstream 104120 5836583 ~ 5837927 (+) True CI01000016_05837368_05837667
CI01000016_05878037_05885761.mRNA mRNA downstream 145574 5878037 ~ 5886192 (+) True CI01000016_05878037_05885761
CI01000016_05891870_05892528.mRNA mRNA downstream 159407 5891870 ~ 5892679 (+) True CI01000016_05891870_05892528
TU109033 other upstream 324394 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 324394 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 506316 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 895602 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 1458352 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 1428178 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 2051602 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 2281900 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 3263635 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 4063168 9795631 ~ 9795684 (+) True G99016

Expression Profile