RNA id: TU109231


Basic Information

Item Value
RNA id TU109231
length 257
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G96047
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 5755638 ~ 5755894 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGAGTTGGCAGATTAACGTAGGTGGACTTGAACTTGAAAAATGGTGTGTACTGACGTCTTTCCGCGGTTGAAACAACATTCCTTCTTTTGTTTATGTTTATTTGATGCTATAAATGAACTAGTAGGAAGAGATGATCGGTTCACGAGCCGCTTGATCTGAGGCGCTACACAGCGATCTGTCACGACACATTAAAGAGCCACAAAGCGGTATTTATTGTTTAAATTTCTTTAAAAATTACAAAATTTGAAATTTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU109217 lncRNA upstream 23175 5732257 ~ 5732463 (+) True G96035
TU109216 lncRNA upstream 28563 5726845 ~ 5727075 (+) True G96034
TU109105 lncRNA upstream 102003 5649852 ~ 5653635 (+) True G95933
TU109088 lncRNA upstream 140148 5610878 ~ 5615490 (+) True G95918
TU109084 lncRNA upstream 147729 5607627 ~ 5607909 (+) True G95915
TU109232 lncRNA downstream 203 5756097 ~ 5756378 (+) True G96048
TU109256 lncRNA downstream 20166 5776060 ~ 5776310 (+) True G96058
TU109274 lncRNA downstream 166867 5922761 ~ 5922984 (+) True G96076
TU109134 lncRNA downstream 168283 5965086 ~ 5965357 (+) True CI01000016_05966893_05982233
TU109277 lncRNA downstream 174498 5930392 ~ 5934791 (+) True G96079
CI01000016_05698858_05706081.mRNA mRNA upstream 48919 5698858 ~ 5706719 (+) True CI01000016_05698858_05706081
CI01000016_05488887_05502270.mRNA mRNA upstream 253288 5488887 ~ 5502350 (+) False CI01000016_05488887_05502270
CI01000016_05475350_05482964.mRNA mRNA upstream 271692 5475350 ~ 5483946 (+) True CI01000016_05475350_05482964
CI01000016_05445824_05454816.mRNA mRNA upstream 300222 5445824 ~ 5455416 (+) True CI01000016_05445824_05454816
CI01000016_05405791_05407797.mRNA mRNA upstream 347675 5405791 ~ 5407963 (+) False CI01000016_05405791_05407797
CI01000016_05797506_05798075.mRNA mRNA downstream 41612 5797506 ~ 5799585 (+) True CI01000016_05797506_05798075
CI01000016_05828974_05833309.mRNA mRNA downstream 72504 5828398 ~ 5833377 (+) True CI01000016_05828974_05833309
CI01000016_05837368_05837667.mRNA mRNA downstream 80689 5836583 ~ 5837927 (+) True CI01000016_05837368_05837667
CI01000016_05878037_05885761.mRNA mRNA downstream 122143 5878037 ~ 5886192 (+) True CI01000016_05878037_05885761
CI01000016_05891870_05892528.mRNA mRNA downstream 135976 5891870 ~ 5892679 (+) True CI01000016_05891870_05892528
TU109033 other upstream 347775 5405869 ~ 5407863 (+) False CI01000016_05405791_05407797
TU109031 other upstream 347775 5406748 ~ 5406829 (+) True G95870
TU108946 other upstream 529697 5219880 ~ 5225941 (+) True G95792
TU108629 other upstream 918983 4834558 ~ 4836655 (+) True G95503
TU108786 other upstream 1481733 4272636 ~ 4273905 (+) True G95648
TU109637 other downstream 1404747 7160641 ~ 7161290 (+) True G96389
TU111256 other downstream 2028171 7785226 ~ 7785723 (+) True G97766
TU111320 other downstream 2258469 8014363 ~ 8015775 (+) True G97824
TU111822 other downstream 3240204 8996098 ~ 9002717 (+) True G98288
TU112665 other downstream 4039737 9795631 ~ 9795684 (+) True G99016

Expression Profile